Browse Element(s) Details


OsAffx.29823.1.S1_x_at

Description tigr:9637.m01027
TID=OsAffx.29823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1299011/11hypothetical protein
LOC_Os03g274901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12970Os.49220.1.S1_at11/119+7469846..7482164expressed protein
LOC_Os09g12970OsAffx.17778.1.S1_at1/119+7469846..7482164expressed protein
LOC_Os09g12980NANA9+7483551..7485529retrotransposon protein, putative, LINE subclass
LOC_Os09g12990OsAffx.29823.1.S1_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29823.1.S1_x_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29308.1.S1_x_at1/119+7493637..7494432hypothetical protein
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_x_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13020OsAffx.17678.1.S1_at11/119+7511402..7511710hypothetical protein
LOC_Os09g13030NANA9+7511888..7514754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13040OsAffx.17679.1.S1_at11/119+7517867..7521324hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29823.1.S1_x_at--492--5371Chr09:7494297..7494321 (25 bp)
GAAGACGATGAAATGACGCCGACAG
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--434--8971Chr09:7494289..7494313 (25 bp)
TGAAATGACGCCGACAGCAGTGATG
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--409--1831Chr09:7494282..7494306 (25 bp)
ACGCCGACAGCAGTGATGGCGCAGC
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--288--1652Chr06:16396830..16396871 (25 bp)
AGCGAGGCAATGCTCCGGCGAGGAG
NONE
OsAffx.29823.1.S1_x_at--1005--5311Chr09:7494211..7494235 (25 bp)
GAAGGTGATGTCACCACTGCTCACC
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--147--1631Chr09:7494116..7494140 (25 bp)
AGCGGATGGTGCTGACTCCAGGCTC
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--350--991Chr09:7493872..7494113 (25 bp)
AGGAGGTCCCGACTGCCGGCCAAAT
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--523--4231Chr09:7493864..7494105 (25 bp)
CCGACTGCCGGCCAAATTAAGAGGG
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--37--4231Chr09:7493802..7493826 (25 bp)
CCGATTTTTGGTATTCAATTTGGTG
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--716--8371Chr09:7493743..7493767 (25 bp)
GGCGCTTGACTTCGGTCGGGAGAGA
LOC_Os09g12990
OsAffx.29823.1.S1_x_at--789--3973Chr03:15754205..15754226 (22 bp)
CGGGAGAGATGAACAGGCGGCGGCT
LOC_Os03g27490
Target Sequence
GAAGACGATGAAATGACGCCGACAGCAGTGATGGCGCAGCGAGGCAATGCTCCGGCGAGGAGGGAGGCCTGCCGGAGGAC
GAGGATGAAGGTGATGTCACCACTGCTCACCAGCGAGGACGAGTTTCCGGCGGTCTCCAGGAGAAACGGAGGCGAGGCCG
GGGGAGAGGAGGTTGCTGCGAAGCGGATGGTGCTGACTCCAGGCTCCGAGGAGGTCCCGACTGCCGGCCAAATTAAGAGG
GGAAAACGTGGGGGAATTGATGATAAGGAGGAGAGGAACCGATTTTTGGTATTCAATTTGGTGGAGAACAAGTGGGGAGG
GAGATCGGCATGCCGGCGGCGCTTGACTTCGGTCGGGAGAGATGAACAGGCGGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29823.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis