Browse Element(s) Details


OsAffx.17778.1.S1_at

Description tigr:9637.m01621
TID=OsAffx.17778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1927010/11hypothetical protein
LOC_Os09g129701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19250NANA9+11507464..11508686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19260OsAffx.17777.1.S1_at11/119+11510063..11512577hypothetical protein
LOC_Os09g19270OsAffx.17778.1.S1_at10/119+11514924..11517242hypothetical protein
LOC_Os09g19270OsAffx.12420.1.S1_at1/119+11514924..11517242hypothetical protein
LOC_Os09g19280NANA9+11539746..11542435retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17778.1.S1_at--970--6591Chr09:11515037..11515392 (25 bp)
GATTGAGCTTTGTGGCATATCCCCT
LOC_Os09g19270
OsAffx.17778.1.S1_at--57--2851NONE
AAGTCTTACATAGTCGTTCGGCTCT
NONE
OsAffx.17778.1.S1_at--984--9394Chr10:23408..23432 (25 bp)
TCGTTCGGCTCTCAGAGTCTGACAA
NONE
OsAffx.17778.1.S1_at--1027--71711Chr12:6102758..6102781 (24 bp)
GTCTGACAAGACCTTATCTGCTCTG
NONE
OsAffx.17778.1.S1_at--762--5593Chr09:11516480..11516504 (25 bp)
GAAATTCCCGTAGGTCTCTCGGAGG
LOC_Os09g19270
OsAffx.17778.1.S1_at--926--9513Chr09:11516494..11516518 (25 bp)
TCTCTCGGAGGCTTGTCGGAACGGC
LOC_Os09g19270
OsAffx.17778.1.S1_at--215--1351Chr09:11516545..11516892 (25 bp)
AGAGTAGCTGTTATCGTGTCGTGGT
LOC_Os09g19270
OsAffx.17778.1.S1_at--738--6937Chr12:15063802..15064027 (25 bp)
GTAGTCGTACCTCAACCATTAGAAG
NONE
OsAffx.17778.1.S1_at--847--9931Chr09:11517038..11517062 (25 bp)
TACGTTTGCCGATCGAAGACCAGTT
LOC_Os09g19270
OsAffx.17778.1.S1_at--1049--6938Chr12:12623805..12623925 (25 bp)
GTAGTCATACCTCGACCATTTGTAG
NONE
OsAffx.17778.1.S1_at--388--10116Chr09:11517171..11517195 (25 bp)
TATGGACGACATTCTCGTGACCTGC
LOC_Os09g19270
Target Sequence 
GATTGAGCTTTGTGGCATATCCCCTCTCCTCCTAAGGGGGCTTGTATTTATACCCATAGATGCCCCCTTGTCCAAGTCTT
ACATAGTCGTTCGGCTCTCAGAGTCTGACAAGACCTTATCTGCTCTGGGCGTCCCCAGCCGAAATTCCCGTAGGTCTCTC
GGAGGCTTGTCGGAACGGCGTAAAGGGTTAATAGGTTCGATTTCAAGAGTAGCTGTTATCGTGTCGTGGTATGAGGACCG
CTACGCTGCTGGTGGAAGACCAGTCGTAGTCGTACCTCAACCATTAGAAGTCGTAGTGCGAGGATCGCTACGTTGCCGAT
CGAAGACCAGTCGTAGTTGTACCTCGACCAGTGGAAGTCGTGGTGCGAGGATCGCTACGTTTGCCGATCGAAGACCAGTT
ATAGTCGTACCTAGACTAGTGGAAGTTGTGGTGCGAGGATCGCTACGTTGCCGATCGAAGACCAGTCGTAGTCATACCTC
GACCATTTGTAGGGAATCCAGAGTAATATATGGACGACATTCTCGTGACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis