Browse Element(s) Details


OsAffx.17777.1.S1_at

Description tigr:9637.m01620
TID=OsAffx.17777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1926011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19250NANA9+11507464..11508686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19260OsAffx.17777.1.S1_at11/119+11510063..11512577hypothetical protein
LOC_Os09g19270OsAffx.17778.1.S1_at10/119+11514924..11517242hypothetical protein
LOC_Os09g19270OsAffx.12420.1.S1_at1/119+11514924..11517242hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17777.1.S1_at--739--8331Chr09:11510803..11510827 (25 bp)
GGCTGATCTCATTCCTTTTGTGAAG
LOC_Os09g19260
OsAffx.17777.1.S1_at--651--6111Chr09:11510594..11510618 (25 bp)
GAGGGCCCGTTTGGATGGCTACAAA
LOC_Os09g19260
OsAffx.17777.1.S1_at--1131--8471Chr09:11510579..11510603 (25 bp)
TGGCTACAAAACTCGGGTTCGTTCT
LOC_Os09g19260
OsAffx.17777.1.S1_at--196--5551Chr09:11510474..11510498 (25 bp)
GAAACTCTGGCTGGAACTTGAGAAA
LOC_Os09g19260
OsAffx.17777.1.S1_at--370--1911Chr09:11510437..11510461 (25 bp)
ACGGAAGGTCTCGTTGACTACTACG
LOC_Os09g19260
OsAffx.17777.1.S1_at--852--6931Chr09:11510407..11510431 (25 bp)
GTAGTCAAGATAAACGCCCTTCGCC
LOC_Os09g19260
OsAffx.17777.1.S1_at--125--10631Chr09:11510313..11510337 (25 bp)
TTCGTCTGGCGCTAACCGATTTGGG
LOC_Os09g19260
OsAffx.17777.1.S1_at--1018--9291Chr09:11510254..11510278 (25 bp)
TCCGCTCTGGACTTCATGGAGTTGA
LOC_Os09g19260
OsAffx.17777.1.S1_at--697--1231Chr09:11510235..11510259 (25 bp)
AGTTGACTCAACAAGCGGGCGGTGT
LOC_Os09g19260
OsAffx.17777.1.S1_at--1013--5991Chr09:11510203..11510227 (25 bp)
GAGACCGTTGTTGCCTATAGAGATT
LOC_Os09g19260
OsAffx.17777.1.S1_at--102--4511Chr09:11510113..11510137 (25 bp)
GCCGATTTCCTGAGGCTTGCCAAAG
LOC_Os09g19260
Target Sequence 
GGCTGATCTCATTCCTTTTGTGAAGGGGGTGGGACACCTTGTTTTGCCCACTGGCAGTCCTGGCTCTTTCGCCCAGTGCT
CGACAGAGCAGATGGCGAGGGCCCGTTTGGATGGCTACAAAACTCGGGTTCGTTCTATGGAGGCGAATGCCGAAATTAAG
AAACTCTGGCTGGAACTTGAGAAAGAAAAGAAGGAAACGGAAGGTCTCGTTGACTACTACGAGTCCGTAGTCAAGATAAA
CGCCCTTCGCCAAGAGCTGGAGCAGGTAAATGCTGCTGCCAAGGCCGCTGCTGAAGAGGCGAAAACTGCCTGCCACACTC
TTCGTCTGGCGCTAACCGATTTGGGCGCCAAGGCTGGCGAAGTCCCAGCCGGAGATGCGTCCGCTCTGGACTTCATGGAG
TTGACTCAACAAGCGGGCGGTGTTGTGGCCGAGACCGTTGTTGCCTATAGAGATTGCTGTGCCCAAGTGTCGGCCACGTT
CGTGCTGGGCCTTCTTCAGCAACACAGCTGCGAGCACATCGCCGATTTCCTGAGGCTTGCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis