Browse Element(s) Details


OsAffx.17679.1.S1_at

Description tigr:9637.m01032
TID=OsAffx.17679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1304011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12990OsAffx.29823.1.S1_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29823.1.S1_x_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29308.1.S1_x_at1/119+7493637..7494432hypothetical protein
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_x_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13020OsAffx.17678.1.S1_at11/119+7511402..7511710hypothetical protein
LOC_Os09g13030NANA9+7511888..7514754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13040OsAffx.17679.1.S1_at11/119+7517867..7521324hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_x_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.18628.1.S1_x_at1/119+7524310..7524849hypothetical protein
LOC_Os09g13060NANA9+7527906..7530974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13070Os.45173.1.S1_x_at2/119+7531372..7533451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13080OsAffx.29826.1.S1_at11/119+7535822..7537000hypothetical protein
LOC_Os09g13090NANA9+7539663..7541396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13100NANA9+7541880..7545546retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17679.1.S1_at--236--591Chr09:7520729..7520753 (25 bp)
ATGCCACCGGCGTGATCTTCATGAA
LOC_Os09g13040
OsAffx.17679.1.S1_at--312--8111Chr09:7520829..7520853 (25 bp)
GGACGTGAAGTTCCATCCGCTGACG
LOC_Os09g13040
OsAffx.17679.1.S1_at--482--551Chr09:7520866..7520890 (25 bp)
ATCCCGCCGCTCATGGTGGACATGA
LOC_Os09g13040
OsAffx.17679.1.S1_at--977--1911Chr09:7520899..7520923 (25 bp)
ACGGTCCTCCGGAACCTGATGATGC
LOC_Os09g13040
OsAffx.17679.1.S1_at--933--9911Chr09:7520965..7520989 (25 bp)
TACTGCTACTTCCTGTCGCAGCTAG
LOC_Os09g13040
OsAffx.17679.1.S1_at--193--7671Chr09:7521028..7521052 (25 bp)
GGGATCATCGTGAGCCTCCTGGCCA
LOC_Os09g13040
OsAffx.17679.1.S1_at--326--2211Chr09:7521128..7521152 (25 bp)
ACAACTACCTGCTCGACACGAGGAA
LOC_Os09g13040
OsAffx.17679.1.S1_at--692--8191Chr09:7521149..7521173 (25 bp)
GGAAGGGCCTCGAACGTATGTACAA
LOC_Os09g13040
OsAffx.17679.1.S1_at--1100--6911Chr09:7521164..7521188 (25 bp)
GTATGTACAAGACCCGCGTGATTAG
LOC_Os09g13040
OsAffx.17679.1.S1_at--294--151Chr09:7521184..7521208 (25 bp)
ATTAGGTGGATAGCGCAGCTCTACC
LOC_Os09g13040
OsAffx.17679.1.S1_at--608--9872Chr09:7521214..7521238 (25 bp)
TACTTGAGCAATCCGTTCGTGCTGA
LOC_Os09g13040
Target Sequence 
ATGCCACCGGCGTGATCTTCATGAAACGCCACCTCCGCCACGGCGCCAGCAGCGGCGCGTGGCGCTGGTTCGTCGACGGC
GGCGGCGCCCGCTCCGTTCTGGACGTGAAGTTCCATCCGCTGACGCTGCGGCTGAGCATCCCGCCGCTCATGGTGGACAT
GAACACGTCCACGGTCCTCCGGAACCTGATGATGCTGGAGCAGCACAACCCGAGCCTGGGGAGCCAGGTCACGGCCTACT
GCTACTTCCTGTCGCAGCTAGCCGGCACGGCGAGCGACGTCGCGCTCCTCGCCAAGAAGGGGATCATCGTGAGCCTCCTG
GCCAGCGACGGCGACGTCGCCAGGATGCTCGGCGAGCTCTGCGTCGGCATCACCATCAACCCGGCCGACGAGCGCAGCCA
CAACTACCTGCTCGACACGAGGAAGGGCCTCGAACGTATGTACAAGACCCGCGTGATTAGGTGGATAGCGCAGCTCTACC
ACCGCTACTTGAGCAATCCGTTCGTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis