Browse Element(s) Details


OsAffx.6260.1.S1_at

Description tigr:9637.m01029
TID=OsAffx.6260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1301011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12980NANA9+7483551..7485529retrotransposon protein, putative, LINE subclass
LOC_Os09g12990OsAffx.29823.1.S1_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29823.1.S1_x_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29308.1.S1_x_at1/119+7493637..7494432hypothetical protein
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_x_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13020OsAffx.17678.1.S1_at11/119+7511402..7511710hypothetical protein
LOC_Os09g13030NANA9+7511888..7514754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13040OsAffx.17679.1.S1_at11/119+7517867..7521324hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_x_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.18628.1.S1_x_at1/119+7524310..7524849hypothetical protein
LOC_Os09g13060NANA9+7527906..7530974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13070Os.45173.1.S1_x_at2/119+7531372..7533451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13080OsAffx.29826.1.S1_at11/119+7535822..7537000hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6260.1.S1_at--653--9451Chr09:7509573..7509597 (25 bp)
TCGGCGTCCACACGCTGGTATTCGC
LOC_Os09g13010
OsAffx.6260.1.S1_at--461--2531Chr09:7509600..7509624 (25 bp)
AACTCACCACCACTGGGTTTCACTC
LOC_Os09g13010
OsAffx.6260.1.S1_at--200--473Chr09:7509630..7509654 (25 bp)
ATCTCGTCCACGCCTGGGTCGTCAT
LOC_Os09g13010
OsAffx.6260.1.S1_at--289--7792Chr09:7509646..7509670 (25 bp)
GGTCGTCATCCACCAAGGCGAAGGT
LOC_Os09g13010
OsAffx.6260.1.S1_at--272--1851Chr09:7509709..7509733 (25 bp)
ACGACATTGCAGATGTGGCCCGCAT
LOC_Os09g13010
OsAffx.6260.1.S1_at--127--5691Chr09:7509711..7509735 (25 bp)
GACATTGCAGATGTGGCCCGCATCA
LOC_Os09g13010
OsAffx.6260.1.S1_at--1069--3591Chr09:7509713..7509737 (25 bp)
CATTGCAGATGTGGCCCGCATCAAC
LOC_Os09g13010
OsAffx.6260.1.S1_at--1095--9692Chr11:20502253..20502647 (25 bp)
TCAACAAGAATGGTGATTCAAATGT
NONE
OsAffx.6260.1.S1_at--327--7671Chr09:7510510..7510792 (25 bp)
GGGATAACTTTATTCTGCGTGTTAA
LOC_Os09g13010
OsAffx.6260.1.S1_at--127--2051Chr09:7510516..7510798 (25 bp)
ACTTTATTCTGCGTGTTAACGTCAA
LOC_Os09g13010
OsAffx.6260.1.S1_at--143--9491Chr09:7510782..7510805 (24 bp)
TCTGCGTGTTAACGTCAAGGAGCTT
LOC_Os09g13010
Target Sequence 
TCGGCGTCCACACGCTGGTATTCGCCCAACTCACCACCACTGGGTTTCACTCGCCGCATCTCGTCCACGCCTGGGTCGTC
ATCCACCAAGGCGAAGGTGACGCCGGCCGATGTCGATGTCGATGACGACGACAAGGACGACATTGCAGATGTGGCCCGCA
TCAACAAGAATGGTGATTCAAATGTAAAAATGGATGATGATGTGGCATCTTTGCATGTTAAGCTTAAGGAGTTAGTGGGG
GATAACTTTATTCTGCGTGTTAACGTCAAGGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis