Browse Element(s) Details


OsAffx.29824.2.S1_at

Description tigr:9632.m01674
TID=OsAffx.29824.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1855011/11hypothetical protein
LOC_Os09g130002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18490Os.45173.1.S1_x_at1/114+10197892..10201099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18500NANA4+10201370..10205782retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18510NANA4+10206485..10206886retrotransposon protein, putative, unclassified
LOC_Os04g18520OsAffx.18377.1.S1_x_at1/114+10208665..10211041hypothetical protein
LOC_Os04g18530NANA4+10215469..10215792expressed protein
LOC_Os04g18540OsAffx.26041.4.S1_s_at11/114+10219071..10219520hAT dimerisation domain-containing protein, putative
LOC_Os04g18550OsAffx.29824.2.S1_at11/114+10222332..10223569hypothetical protein
LOC_Os04g18559NANA4+10224901..10226302retrotransposon, putative, centromere-specific
LOC_Os04g18570NANA4+10227810..10231740retrotransposon protein, putative, unclassified
LOC_Os04g18580Os.51841.1.S1_x_at1/114+10235376..10241782transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g18580OsAffx.10222.1.S1_x_at1/114+10235376..10241782transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g18590OsAffx.26063.1.S1_at11/114+10243198..10243641hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29824.2.S1_at--96--1271Chr04:10223007..10223031 (25 bp)
AGATAATCACTTACCAGGCCCTAGT
LOC_Os04g18550
OsAffx.29824.2.S1_at--303--10711Chr04:10223035..10223059 (25 bp)
TTGCTTCCCTTTCAAGAGTCTTCCA
LOC_Os04g18550
OsAffx.29824.2.S1_at--973--6091Chr04:10223050..10223074 (25 bp)
GAGTCTTCCATCAGAAGTGTGCACA
LOC_Os04g18550
OsAffx.29824.2.S1_at--362--5331Chr04:10223063..10223087 (25 bp)
GAAGTGTGCACATCTGTGGCTGAAA
LOC_Os04g18550
OsAffx.29824.2.S1_at--796--2292Chr09:7508226..7508250 (25 bp)
AAATGTATTCTTGCCTCTCATCATA
LOC_Os09g13000
OsAffx.29824.2.S1_at--995--10692Chr09:7508236..7508597 (25 bp)
TTGCCTCTCATCATAAGCTGGAATT
LOC_Os09g13000
OsAffx.29824.2.S1_at--84--2691Chr04:10223110..10223134 (25 bp)
AAGCTGGAATTCACCACTGCTGAAA
LOC_Os04g18550
OsAffx.29824.2.S1_at--1061--3091Chr04:10223145..10223169 (25 bp)
AATATCACTGGTGGCTTGGCTTCAA
LOC_Os04g18550
OsAffx.29824.2.S1_at--1016--4891Chr04:10223163..10223187 (25 bp)
GCTTCAAGCCTTGTCTACATGTACA
LOC_Os04g18550
OsAffx.29824.2.S1_at--183--9551Chr04:10223317..10223341 (25 bp)
TCTTCATGGCACTGATAACTTGACA
LOC_Os04g18550
OsAffx.29824.2.S1_at--261--9331Chr04:10223428..10223452 (25 bp)
TCCCACTGCCCATTATGATGCTATG
LOC_Os04g18550
Target Sequence 
AGATAATCACTTACCAGGCCCTAGTGCCTTGCTTCCCTTTCAAGAGTCTTCCATCAGAAGTGTGCACATCTGTGGCTGAA
AATGTATTCTTGCCTCTCATCATAAGCTGGAATTCACCACTGCTGAAACAACCTATAGAATATCACTGGTGGCTTGGCTT
CAAGCCTTGTCTACATGTACAAATACCTAGAAGGGTGTGGTATATGGCTTTTGGTTCAAGTAAAGATCAGGTGGTTTTTG
TAAGGCCTGCAAAGCGTCGACGGGTTGATGCTGAACAGACAGAGGTGGTCAAAAGGCCCAGGGCCAAACTTCTTCATGGC
ACTGATAACTTGACAATGAGCCCAAGCTGCTCGGCCCAGGGAGAGAAGTCTGACTTGAACCAAGAATCACCCAAGAAGAG
GTCTGGAGTTCAACCTGAGCCTCCCACTGCCCATTATGATGCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29824.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis