Browse Element(s) Details


OsAffx.18377.1.S1_x_at

Description tigr:9638.m02038
TID=OsAffx.18377.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2433011/11hypothetical protein
LOC_Os12g134903/11hypothetical protein
LOC_Os07g456301/11hypothetical protein
LOC_Os10g173001/11hypothetical protein
LOC_Os06g222201/11hypothetical protein
LOC_Os05g181001/11hypothetical protein
LOC_Os04g185201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24280OsAffx.31869.3.S1_x_at2/1110+12107474..12107989retrotransposon protein, putative, unclassified
LOC_Os10g24280OsAffx.31869.5.S1_x_at1/1110+12107474..12107989retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.1.S1_at5/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.3.S1_x_at4/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.4.S1_at2/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.5.S1_x_at2/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.4.S1_x_at1/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24300NANA10+12116732..12117523hypothetical protein
LOC_Os10g24310OsAffx.16111.1.S1_at11/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_at6/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_x_at4/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22699.1.S1_x_at2/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22896.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310Os.51348.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24320NANA10+12129267..12130807hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_x_at11/1110+12131141..12131983hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_at8/1110+12131141..12131983hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18377.1.S1_x_at--251--4335Chr06:12889354..12889376 (23 bp)
CCATCGGCCGAGTATGCAGAGGTTG
LOC_Os06g22220
OsAffx.18377.1.S1_x_at--952--9032Chr10:8371976..8372048 (25 bp)
TGCAGAGGTTGTGAATCGGCCACCT
LOC_Os10g17300
OsAffx.18377.1.S1_x_at--356--5251Chr10:12131405..12131429 (25 bp)
GAATCGGCCACCTCTGACAGAAGCT
LOC_Os10g24330
OsAffx.18377.1.S1_x_at--783--4152Chr12:7572968..7572991 (24 bp)
CCCAAGGTTGGAGCCCACTACTAAT
LOC_Os12g13490
OsAffx.18377.1.S1_x_at--367--6612Chr12:7572973..7572997 (25 bp)
GTTGGAGCCCACTACTAATGATGAT
LOC_Os12g13490
OsAffx.18377.1.S1_x_at--711--7612Chr05:10390709..10390733 (25 bp)
GGGAAGAAGTTACCCATCGCCGATG
LOC_Os05g18100
OsAffx.18377.1.S1_x_at--805--532Chr12:7573002..7573024 (23 bp)
ATCGCCGATGCCTATCATATGGTGA
LOC_Os12g13490
OsAffx.18377.1.S1_x_at--157--431Chr10:12131315..12131339 (25 bp)
ATCATATGGTGAAGCTGCATCGACA
LOC_Os10g24330
OsAffx.18377.1.S1_x_at--978--5291Chr10:12131227..12131251 (25 bp)
GAAGGCTTCCAAAGAGATGCTCAAG
LOC_Os10g24330
OsAffx.18377.1.S1_x_at--208--1091Chr10:12131180..12131204 (25 bp)
AGTGAATTTCGACCTTCCATCGGAC
LOC_Os10g24330
OsAffx.18377.1.S1_x_at--643--5211Chr10:12131177..12131201 (25 bp)
GAATTTCGACCTTCCATCGGACTTC
LOC_Os10g24330
Target Sequence 
CCATCGGCCGAGTATGCAGAGGTTGTGAATCGGCCACCTCTGACAGAAGCTGAATTCCCAAGGTTGGAGCCCACTACTAA
TGATGATGGGGAAGAAGTTACCCATCGCCGATGCCTATCATATGGTGAAGCTGCATCGACACCAGCCGATTCAGGAGCAA
AGCTATCGGCTGAACTGCTCAAGGACTGGTTCTGCAGTTTTTATGAAGGCTTCCAAAGAGATGCTCAAGTCTGGTTTCCA
TATGAGGATTCAGTGAATTTCGACCTTCCATCGGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18377.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis