Browse Element(s) Details


OsAffx.28610.3.S1_at

Description tigr:9632.m02058
TID=OsAffx.28610.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2229011/11hypothetical protein
LOC_Os03g221304/11hypothetical protein
LOC_Os06g261603/11hypothetical protein
LOC_Os10g243403/11hypothetical protein
LOC_Os01g532943/11NADPH oxidase, putative, expressed
LOC_Os06g168002/11hypothetical protein
LOC_Os07g268602/11hypothetical protein
LOC_Os08g261502/11hypothetical protein
LOC_Os06g325201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein
LOC_Os04g22340OsAffx.26096.1.S1_at11/114+12614924..12615472SCP-like extracellular protein, expressed
LOC_Os04g22350OsAffx.3859.1.S1_at11/114+12617590..12619001hypothetical protein
LOC_Os04g22360Os.26778.1.S1_at11/114+12621227..12626987expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28610.3.S1_at--1004--10551Chr04:12595381..12595501 (25 bp)
TTCTTGCGCATCCAGGCTTGGATAG
LOC_Os04g22290
OsAffx.28610.3.S1_at--912--23110Chr10:12142659..12142683 (25 bp)
AAAGGGTTAGTGCATGTGCTCTCAT
LOC_Os10g24340
OsAffx.28610.3.S1_at--955--7711Chr10:12142672..12142696 (25 bp)
ATGTGCTCTCATATGGTACCAGGGT
LOC_Os10g24340
OsAffx.28610.3.S1_at--838--10691Chr04:12595750..12595903 (25 bp)
TTGCTTCGGTGGTCATGTTCCATAG
LOC_Os04g22290
OsAffx.28610.3.S1_at--426--5771Chr04:12595940..12595964 (25 bp)
GACGATGACTAAGTCGCCGGAGCCG
LOC_Os04g22290
OsAffx.28610.3.S1_at--1090--2791Chr04:12595968..12595992 (25 bp)
AAGATGACCGAGCTCTGGGCATTCT
LOC_Os04g22290
OsAffx.28610.3.S1_at--1147--74110Chr08:15271363..15271387 (25 bp)
GTGTTTTCTTGGACTTGGAACGCGA
NONE
OsAffx.28610.3.S1_at--67--6135Chr10:12143189..12143213 (25 bp)
GAGTGTGCTGTTGCTTCTGGTGCTT
LOC_Os10g24340
OsAffx.28610.3.S1_at--534--3651Chr04:12596048..12596072 (25 bp)
CTTCTGGTGCTTTGTCTTGGGAAAT
LOC_Os04g22290
OsAffx.28610.3.S1_at--42--5431Chr04:12596571..12596595 (25 bp)
GAAGCCTGGGCTAGAGATCCTCTTG
LOC_Os04g22290
OsAffx.28610.3.S1_at--527--1351Chr04:12596583..12596607 (25 bp)
AGAGATCCTCTTGGTCGAGGGTGAT
LOC_Os04g22290
Target Sequence 
TTCTTGCGCATCCAGGCTTGGATAGTGCAAAAGGGTTAGTGCATGTGCTCTCATATGGTACCAGGGTGCTCACCAAGCAG
AGAAACGGAGGCAGCGAGGTCCAGGGAGCGGTGGAGACGGTGGTTGTTGGCCAACGGCAGCAAAACTCCGGCGTCGACGT
CGCCGGATCGACTCAAGGCGCGAACTGCAACTTCGAGAGTACAGGGGTGTTACGGATGAGCCACAGAGGGTGCATGCGCG
AGGAATCCGGCGGAAACTCACCGGAGCTTGGTGTTGCTTCGGTGGTCATGTTCCATAGGAGGGAAGAGAGAGGGACTCAC
TGGGGATGCACAGCGACGATGACTAAGTCGCCGGAGCCGGGGAAGATGACCGAGCTCTGGGCATTCTGGGCGTGGGGTGT
GTTTTCTTGGACTTGGAACGCGATGTGGGGAGTGTGCTGTTGCTTCTGGTGCTTTGTCTTGGGAAATAAGAGCAGCAAGA
AGCCTGGGCTAGAGATCCTCTTGGTCGAGGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28610.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis