Browse Element(s) Details


Os.4760.1.S1_at

Description gb:AK071065.1
DB_XREF= gi:32981088
TID=Os.4760.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080M03, full insert sequence.
FL= gb:AK071065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3942011/11Pyrophosphate-fructose 6-phosphate 1-phosphotransferase, putative, expressed
LOC_Os07g268601/11hypothetical protein
LOC_Os10g243401/11hypothetical protein
LOC_Os01g532941/11NADPH oxidase, putative, expressed
LOC_Os04g222901/11hypothetical protein
LOC_Os06g261601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39390Os.31312.5.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39390Os.31312.2.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_x_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39410Os.51054.1.S1_at11/114+23238894..23242141pentatricopeptide, putative, expressed
LOC_Os04g39420Os.4760.1.S1_at11/114+23244256..23246625Pyrophosphate-fructose 6-phosphate 1-phosphotransferase, putative, expressed
LOC_Os04g39430Os.17927.2.S1_x_at11/114+23248070..23252491Cytochrome P450 724B1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4760.1.S1_at--348--3618Chr10:12143273..12143354 (25 bp)
CATTGTGTTCCTTGATGTGGGTCCC
LOC_Os10g24340
Os.4760.1.S1_at--594--8631Chr04:23246051..23246075 (25 bp)
TGGGTCCCTGGTTAAAATCTGAGCT
LOC_Os04g39420
Os.4760.1.S1_at--95--6391Chr04:23246131..23246155 (25 bp)
GATCCCACTTACATGATACGAGCTG
LOC_Os04g39420
Os.4760.1.S1_at--445--5891Chr04:23246150..23246174 (25 bp)
GAGCTGTTCCAGCAAATGCCACTGA
LOC_Os04g39420
Os.4760.1.S1_at--100--9891Chr04:23246187..23246211 (25 bp)
TACATTGTTGGCACATTCGGCGATC
LOC_Os04g39420
Os.4760.1.S1_at--751--6431Chr04:23246217..23246241 (25 bp)
GATCATGGCTGGGTACACTGGCTTC
LOC_Os04g39420
Os.4760.1.S1_at--1146--6931Chr04:23246242..23246266 (25 bp)
GTCCCTGGCCCGATTAATGGAAACT
LOC_Os04g39420
Os.4760.1.S1_at--796--10791Chr04:23246416..23246440 (25 bp)
TTGTATGACTTTTTCTCCCTGGAGC
LOC_Os04g39420
Os.4760.1.S1_at--1086--8071Chr04:23246436..23246460 (25 bp)
GGAGCCTTGACACGTTAAGCTTGAT
LOC_Os04g39420
Os.4760.1.S1_at--1076--3431Chr04:23246472..23246496 (25 bp)
CAGTTTCTTCTCTTGTTATGCCGAT
LOC_Os04g39420
Os.4760.1.S1_at--389--8791Chr04:23246509..23246533 (25 bp)
TGTTAGGTATTCTGATCTCCCTGGT
LOC_Os04g39420
Target Sequence 
CATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACNCCCAAGCGAGTTGT
TCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTG
TTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTA
CATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCA
CAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCC
CTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTA
GGTATTCTGATCTCCCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis