Browse Element(s) Details


Os.51054.1.S1_at

Description gb:AK060385.1
DB_XREF= gi:32970403
TID=Os.51054.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F05, full insert sequence.
FL= gb:AK060385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3941011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39380OsAffx.14202.1.S1_at11/114+23216654..23217200expressed protein
LOC_Os04g39390Os.31312.5.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39390Os.31312.2.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_x_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39410Os.51054.1.S1_at11/114+23238894..23242141pentatricopeptide, putative, expressed
LOC_Os04g39420Os.4760.1.S1_at11/114+23244256..23246625Pyrophosphate-fructose 6-phosphate 1-phosphotransferase, putative, expressed
LOC_Os04g39430Os.17927.2.S1_x_at11/114+23248070..23252491Cytochrome P450 724B1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51054.1.S1_at--645--2631Chr04:23239435..23239459 (25 bp)
AACCTCAGAGTTTGCGGCGATTGCC
LOC_Os04g39410
Os.51054.1.S1_at--275--71Chr04:23239416..23239440 (25 bp)
ATTGCCATGAGTTCACCAAGCTAGT
LOC_Os04g39410
Os.51054.1.S1_at--654--10831Chr04:23239368..23239392 (25 bp)
TTGTGGTCCGAGACGCCAACAGATT
LOC_Os04g39410
Os.51054.1.S1_at--1148--8551Chr04:23239331..23239355 (25 bp)
TGGAGGCACTTGTTCTTGCGGTGAC
LOC_Os04g39410
Os.51054.1.S1_at--654--5691Chr04:23239309..23239333 (25 bp)
GACTTCTGGTGAGTGGCCTTAGACA
LOC_Os04g39410
Os.51054.1.S1_at--572--6011Chr04:23239180..23239204 (25 bp)
GAGAGAAATGGCTTGTCCTGCTCCC
LOC_Os04g39410
Os.51054.1.S1_at--236--2251Chr04:23239151..23239175 (25 bp)
AAATAGGATCTCGTTTGCCGCCCAT
LOC_Os04g39410
Os.51054.1.S1_at--904--4151Chr04:23239133..23239157 (25 bp)
CGCCCATTCCGGATTGAGTTTATTC
LOC_Os04g39410
Os.51054.1.S1_at--544--131Chr04:23239112..23239136 (25 bp)
ATTCACCATCTGTTTTTCATCTCTA
LOC_Os04g39410
Os.51054.1.S1_at--412--3191Chr04:23238983..23239007 (25 bp)
CAATAGCTGATTCCTTTCACTGTTC
LOC_Os04g39410
Os.51054.1.S1_at--654--1631Chr04:23238924..23238948 (25 bp)
AGCGTTCATATGTCACTCTAGGGTT
LOC_Os04g39410
Target Sequence 
AACCTCAGAGTTTGCGGCGATTGCCATGAGTTCACCAAGCTAGTGTCCAAGCTATTTGAAAGGGAAATTGTGGTCCGAGA
CGCCAACAGATTCCATCATTTCAGTGGAGGCACTTGTTCTTGCGGTGACTTCTGGTGAGTGGCCTTAGACAGTTAGATTG
TAGAAGTATAGAACATTGATAGCAAGAATGGTGAAGAGGTTAGAACAAAGGCACATGAGTGATGAACTGGCTGAGAATGG
GGAAGAAAAGAAGAAGAGAGAAATGGCTTGTCCTGCTCCCTGACAAATAGGATCTCGTTTGCCGCCCATTCCGGATTGAG
TTTATTCACCATCTGTTTTTCATCTCTAGATGGATCATAGAGCAACTGAGGAAGAGTCTGAATGGCACGAGGACTTGTGA
TTTATAGCGTCAAAATGTAAAACGATGTAAAGGATTCTTTTCTGTAAAATTTCAATAGCTGATTCCTTTCACTGTTCATA
ATCACTTGAGTTGAGAGGCCTTCTCTCAGTTAGCGTTCATATGTCACTCTAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis