Browse Element(s) Details


Os.17927.2.S1_x_at

Description gb:AK106528.1
DB_XREF= gi:32991737
TID=Os.17927.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G06, full insert sequence.
FL= gb:AK119772.1 gb:AK106528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3943011/11Cytochrome P450 724B1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39390Os.31312.5.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39390Os.31312.2.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_x_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39410Os.51054.1.S1_at11/114+23238894..23242141pentatricopeptide, putative, expressed
LOC_Os04g39420Os.4760.1.S1_at11/114+23244256..23246625Pyrophosphate-fructose 6-phosphate 1-phosphotransferase, putative, expressed
LOC_Os04g39430Os.17927.2.S1_x_at11/114+23248070..23252491Cytochrome P450 724B1, putative, expressed
LOC_Os04g39440Os.8483.1.S1_at11/114+23273840..23276266Ras-related protein Rab-2-B, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042814biological_processmonopolar cell growth
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0010012molecular_functionsteroid 22-alpha hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17927.2.S1_x_at--263--9491Chr04:23249227..23249251 (25 bp)
TCTGCCCTGGATCAGAGCTTGCAAA
LOC_Os04g39430
Os.17927.2.S1_x_at--217--2331Chr04:23249204..23249228 (25 bp)
AAAGTAGAGGCTGCTTTCTTCCTCC
LOC_Os04g39430
Os.17927.2.S1_x_at--485--6232Chr12:3633463..3633484 (22 bp)
GATGGCGATGACATTCCGATGGCAT
NONE
Os.17927.2.S1_x_at--560--6231Chr04:23248467..23248491 (25 bp)
GATGGCATACCCGTACGTGGAGTTC
LOC_Os04g39430
Os.17927.2.S1_x_at--647--8012Chr04:23248449..23248473 (25 bp)
GGAGTTCCAGAGAGGTCTGCCCATA
LOC_Os04g39430
Os.17927.2.S1_x_at--224--9491Chr04:23248434..23248458 (25 bp)
TCTGCCCATAGAAATCGAGCCACTT
LOC_Os04g39430
Os.17927.2.S1_x_at--877--1692Chr04:23248417..23248441 (25 bp)
AGCCACTTTGCTCTGAATCCTGACA
LOC_Os04g39430
Os.17927.2.S1_x_at--192--2131Chr04:23248395..23248419 (25 bp)
ACAGGTTTGCAGTTGCAGCCACGGT
LOC_Os04g39430
Os.17927.2.S1_x_at--822--5871Chr04:23248370..23248394 (25 bp)
GAGCGAGTTCATCAAATCATCCCCG
LOC_Os04g39430
Os.17927.2.S1_x_at--654--10191Chr04:23248178..23248202 (25 bp)
TATATTTTGTCCATGCCGATTGCTT
LOC_Os04g39430
Os.17927.2.S1_x_at--355--4371Chr04:23248114..23248138 (25 bp)
CCACTGTTTCAACTTTCATCTGCTA
LOC_Os04g39430
Target Sequence 
TCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATC
GATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTC
TGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGG
CGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTG
AGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCAT
GCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17927.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis