Browse Element(s) Details


OsAffx.26095.1.S1_at

Description tigr:9632.m02061
TID=OsAffx.26095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2232011/11hypothetical protein
LOC_Os02g298701/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein
LOC_Os04g22340OsAffx.26096.1.S1_at11/114+12614924..12615472SCP-like extracellular protein, expressed
LOC_Os04g22350OsAffx.3859.1.S1_at11/114+12617590..12619001hypothetical protein
LOC_Os04g22360Os.26778.1.S1_at11/114+12621227..12626987expressed protein
LOC_Os04g22370NANA4+12632769..12635185hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26095.1.S1_at--649--8571Chr04:12609399..12609702 (25 bp)
TGGTAGACTGAAGAGGGTTTGCTAT
LOC_Os04g22320
OsAffx.26095.1.S1_at--373--7831Chr04:12609398..12609701 (25 bp)
GGTAGACTGAAGAGGGTTTGCTATT
LOC_Os04g22320
OsAffx.26095.1.S1_at--600--1051Chr04:12609386..12609410 (25 bp)
AGGGTTTGCTATTTTGTCGGGTCTG
LOC_Os04g22320
OsAffx.26095.1.S1_at--913--7851Chr04:12609384..12609408 (25 bp)
GGTTTGCTATTTTGTCGGGTCTGGT
LOC_Os04g22320
OsAffx.26095.1.S1_at--104--6851Chr04:12609383..12609407 (25 bp)
GTTTGCTATTTTGTCGGGTCTGGTC
LOC_Os04g22320
OsAffx.26095.1.S1_at--922--10271Chr04:12609382..12609406 (25 bp)
TTTGCTATTTTGTCGGGTCTGGTCA
LOC_Os04g22320
OsAffx.26095.1.S1_at--59--3691Chr04:12609378..12609402 (25 bp)
CTATTTTGTCGGGTCTGGTCAGACC
LOC_Os04g22320
OsAffx.26095.1.S1_at--844--10191Chr04:12609377..12609401 (25 bp)
TATTTTGTCGGGTCTGGTCAGACCG
LOC_Os04g22320
OsAffx.26095.1.S1_at--881--153Chr04:12609376..12609400 (25 bp)
ATTTTGTCGGGTCTGGTCAGACCGG
LOC_Os04g22320
OsAffx.26095.1.S1_at--1154--7791Chr04:12609367..12609391 (25 bp)
GGTCTGGTCAGACCGGGCTGGTGAG
LOC_Os04g22320
OsAffx.26095.1.S1_at--526--1771Chr04:12609356..12609380 (25 bp)
ACCGGGCTGGTGAGGCCGGTCAGAC
LOC_Os04g22320
Target Sequence 
TGGTAGACTGAAGAGGGTTTGCTATTTTGTCGGGTCTGGTCAGACCGGGCTGGTGAGGCCGGTCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis