Browse Element(s) Details


Os.26778.1.S1_at

Description gb:CB675797
DB_XREF= gi:29679522
DB_XREF=OSJNEe11L19.r
CLONE=OSJNEe11L19
TID=Os.26778.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26778 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47529 (A.thaliana) T47529 hypothetical protein F16L2.100 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein
LOC_Os04g22340OsAffx.26096.1.S1_at11/114+12614924..12615472SCP-like extracellular protein, expressed
LOC_Os04g22350OsAffx.3859.1.S1_at11/114+12617590..12619001hypothetical protein
LOC_Os04g22360Os.26778.1.S1_at11/114+12621227..12626987expressed protein
LOC_Os04g22370NANA4+12632769..12635185hypothetical protein
LOC_Os04g22380Os.49284.1.S1_x_at4/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22380Os.27645.1.S1_x_at3/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22380Os.49284.1.S1_at1/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.49284.1.S1_x_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.27645.1.S1_x_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.49284.1.S1_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26778.1.S1_at--279--10731Chr04:12626440..12626464 (25 bp)
TTGCTAGACCGCTACCCGTAAGAAT
LOC_Os04g22360
Os.26778.1.S1_at--476--8051Chr04:12626472..12626496 (25 bp)
GGAGATGCTCCTTCATAAAACTTCT
LOC_Os04g22360
Os.26778.1.S1_at--622--9711Chr04:12626496..12626520 (25 bp)
TCAACTTGTTTTGCTCACATCGACG
LOC_Os04g22360
Os.26778.1.S1_at--1134--5991Chr04:12626564..12626588 (25 bp)
GAGACCTTGTCATCATATCACAAAT
LOC_Os04g22360
Os.26778.1.S1_at--178--7331Chr04:12626608..12626632 (25 bp)
GTGAAGGAAAACAGGCCAGCGCGTC
LOC_Os04g22360
Os.26778.1.S1_at--601--8491Chr04:12626651..12626675 (25 bp)
TGGCATCTTATTAACAAGCGTCTGT
LOC_Os04g22360
Os.26778.1.S1_at--1092--2671Chr04:12626666..12626690 (25 bp)
AAGCGTCTGTGAACATATAGTCTTC
LOC_Os04g22360
Os.26778.1.S1_at--948--7711Chr04:12626786..12626810 (25 bp)
GGGTGTTTAGTTTGTCGACATTCAT
LOC_Os04g22360
Os.26778.1.S1_at--972--2331Chr04:12626874..12626898 (25 bp)
AAAGACTAACCAGAGCTATGCTTGA
LOC_Os04g22360
Os.26778.1.S1_at--503--4931Chr04:12626893..12626917 (25 bp)
GCTTGAGGCAAGTACTTCTGATTAT
LOC_Os04g22360
Os.26778.1.S1_at--23--10611Chr04:12626908..12626932 (25 bp)
TTCTGATTATAGTTGGCTACTCCTA
LOC_Os04g22360
Target Sequence 
TTGCTAGACCGCTACCCGTAAGAATACGCATAGGAGATGCTCCTTCATAAAACTTCTCAACTTGTTTTGCTCACATCGAC
GCCGNTAGAATGTGTACAGNGGGNTCATTCTTTGGGCAATTNCTGAGACCTTGTCATCATATCACAAATAATTTGGACGC
TTTCNCCAGTGAAGGAAAACAGGCCAGCGCGTCGGGAGTCATGGGGTGATTTGGCATCTTATTAACAAGCGTCTGTGAAC
ATATAGTCTTCAATTGTTTGGACACATGATCTAACCATAAGAGNTTACAATCAAGTTCTCATAAGATTGGAGCTGNTTAT
GTCTTTTTTTTTNNCATTNGAATGTAGGGTGTTTAGTTTGTCGACATTCATGTCATGTAGTGGTNGCTCAGGAAACCAAC
AGCACTTCTTGGNCAGNNATAGAGAATTAGAGATAAAGACTAACCAGAGCTATGCTTGAGGCAAGTACTTCTGATTATAG
TTGGCTACTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis