Browse Element(s) Details


OsAffx.28610.1.S1_x_at

Description tigr:9636.m02483
TID=OsAffx.28610.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g243408/11hypothetical protein
LOC_Os03g221307/11hypothetical protein
LOC_Os01g532946/11NADPH oxidase, putative, expressed
LOC_Os07g268606/11hypothetical protein
LOC_Os04g222905/11hypothetical protein
LOC_Os06g261604/11hypothetical protein
LOC_Os06g325201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24300NANA10+12116732..12117523hypothetical protein
LOC_Os10g24310OsAffx.16111.1.S1_at11/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_at6/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_x_at4/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22699.1.S1_x_at2/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22896.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310Os.51348.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24320NANA10+12129267..12130807hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_x_at11/1110+12131141..12131983hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_at8/1110+12131141..12131983hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28610.1.S1_x_at--1135--8334Chr10:12143261..12143285 (25 bp)
GGCTGGTGCTTTCATTGTGTTCCTT
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--159--39110Chr12:12901647..12901778 (25 bp)
CTGGTGCTTTCATTGTGTTCCTTGG
NONE
OsAffx.28610.1.S1_x_at--176--7758Chr10:12143265..12143289 (25 bp)
GGTGCTTTCATTGTGTTCCTTGGGC
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--378--4897Chr10:12143268..12143292 (25 bp)
GCTTTCATTGTGTTCCTTGGGCATC
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--745--10317Chr10:12143270..12143294 (25 bp)
TTTCATTGTGTTCCTTGGGCATCCA
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--276--10556Chr10:12143271..12143295 (25 bp)
TTCATTGTGTTCCTTGGGCATCCAT
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--616--35Chr10:12143274..12143298 (25 bp)
ATTGTGTTCCTTGGGCATCCATTGG
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--565--7918Chr10:12143421..12143445 (25 bp)
GGTTGCCTGCCAAGGATCTTTGGAG
LOC_Os10g24340
OsAffx.28610.1.S1_x_at--946--3054Chr10:12143476..12143500 (25 bp)
AATCTGGGCTAGATATCCTCTTGGT
NONE
OsAffx.28610.1.S1_x_at--619--39Chr10:12143591..12143611 (21 bp)
ATTGGTGTTGGTTAGCAGCAGTTGA
NONE
OsAffx.28610.1.S1_x_at--992--8951Chr08:15271816..15271840 (25 bp)
TGACAGTGCAGTTATGTCACGCCCA
NONE
Target Sequence 
GGCTGGTGCTTTCATTGTGTTCCTTGGGCATCCATTGGGCATGGGGCACAGTGGATGCTGTGAGGGGAGAGTGGGAGGCT
GTCATGTGGGTCCCAGAGGGTGTGGGGCCCACTGTCAGTGAAAGAAATTCNAANATAGCCTTGGAGGCTNNGTCAAAGAG
GGTTGCCTGCCAAGGATCTTTGGAGGGGATTCAAGGTGGATTTTGTGCAGCAAGAAATCTGGGCTAGATATCCTCTTGGT
CAGGGGTGATGTGGAGAGTAAATGTGCTGAAGTGGATTGGTGTTGGTTAGCAGCAGTTGACAGTGCAGTTATGTCACGCC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28610.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis