Browse Element(s) Details


OsAffx.20409.1.S1_at

Description tigr:9638.m02041
TID=OsAffx.20409.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2436011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24310OsAffx.16111.1.S1_at11/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_at6/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_x_at4/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22699.1.S1_x_at2/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22896.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310Os.51348.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24320NANA10+12129267..12130807hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_x_at11/1110+12131141..12131983hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_at8/1110+12131141..12131983hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein
LOC_Os10g24400OsAffx.203.1.S1_at11/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24400Os.53111.1.S1_at1/1110+12173621..12180121retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20409.1.S1_at--783--9691Chr10:12147874..12147898 (25 bp)
TCACTCTGTTGACAATGAGCCCATT
LOC_Os10g24360
OsAffx.20409.1.S1_at--240--4171Chr10:12147893..12147917 (25 bp)
CCCATTGGGCCGCAAGTCAAGTTAG
LOC_Os10g24360
OsAffx.20409.1.S1_at--68--10091Chr10:12147915..12147939 (25 bp)
TAGGAGACGGTGACTTTGACTTGAA
LOC_Os10g24360
OsAffx.20409.1.S1_at--598--10751Chr10:12147930..12148376 (25 bp)
TTGACTTGAAAACCAGCGATCACCT
LOC_Os10g24360
OsAffx.20409.1.S1_at--227--5871Chr10:12148394..12148418 (25 bp)
GAGCCTTCTTCTACGAGACGGTTAG
LOC_Os10g24360
OsAffx.20409.1.S1_at--200--10451Chr10:12148415..12148439 (25 bp)
TTAGAGGCGCCGTAGATTTAATCGA
LOC_Os10g24360
OsAffx.20409.1.S1_at--44--4251Chr10:12148485..12148509 (25 bp)
CCGTCAACGCGACATGCACAATGTT
LOC_Os10g24360
OsAffx.20409.1.S1_at--1096--2171Chr10:12148611..12148635 (25 bp)
ACACATCACATGTGGAGTCTGCAGC
LOC_Os10g24360
OsAffx.20409.1.S1_at--407--1151Chr10:12148626..12148650 (25 bp)
AGTCTGCAGCAACGCGGATCATTCC
LOC_Os10g24360
OsAffx.20409.1.S1_at--25--7971Chr10:12148641..12148665 (25 bp)
GGATCATTCCGGGACTAGTGTTGTG
LOC_Os10g24360
OsAffx.20409.1.S1_at--548--7831Chr10:12148676..12148700 (25 bp)
GGTACGGCCGTATATTCAGATGTCA
LOC_Os10g24360
Target Sequence 
TCACTCTGTTGACAATGAGCCCATTGGGCCGCAAGTCAAGTTAGGAGACGGTGACTTTGACTTGAAAACCAGCGATCACC
TGGATGCTGCAGCTGGAGGAGCCTTCTTCTACGAGACGGTTAGAGGCGCCGTAGATTTAATCGAGAAGATGGTCTCGAAC
ATGGGTTGGAGCGAGGAACAACTCCAAACCCGTCAACGCGACATGCACAATGTTAAGGAGACGGAAATGCTTGCTGCCAA
GTTGGATCTCCTGATGAAACGACTGGACGATCAAGAGAAGAACATGCCTCAAGGCACCGTCAAGGCCTTGGACTCACACA
TCACATGTGGAGTCTGCAGCAACGCGGATCATTCCGGGACTAGTGTTGTGGATAACGGTTGGTACGGCCGTATATTCAGA
TGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis