Browse Element(s) Details


OsAffx.23458.1.S1_x_at

Description tigr:9636.m02100
TID=OsAffx.23458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2147011/11hypothetical protein
LOC_Os07g204001/11hypothetical protein
LOC_Os07g259301/11hypothetical protein
LOC_Os11g224801/11hypothetical protein
LOC_Os10g243601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21410NANA8+12762634..12765731retrotransposon, putative, centromere-specific
LOC_Os08g21420Os.52323.1.S1_at1/118+12769622..12772861hypothetical protein
LOC_Os08g21434Os.47004.1.S1_at2/118+12773314..12777167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21434OsAffx.13882.2.S1_at1/118+12773314..12777167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21450NANA8+12780439..12780738transposon protein, putative, unclassified
LOC_Os08g21460OsAffx.20604.2.S1_at1/118+12784832..12788662retrotransposon protein, putative, unclassified
LOC_Os08g21460OsAffx.22699.1.S1_x_at1/118+12784832..12788662retrotransposon protein, putative, unclassified
LOC_Os08g21470OsAffx.23458.1.S1_x_at11/118+12790630..12791462hypothetical protein
LOC_Os08g21470OsAffx.26058.1.S1_at1/118+12790630..12791462hypothetical protein
LOC_Os08g21470OsAffx.16344.1.S1_at1/118+12790630..12791462hypothetical protein
LOC_Os08g21474OsAffx.17095.2.S1_at11/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.17095.2.S1_x_at11/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.19757.1.S1_at3/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.19946.1.S1_at2/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.26043.1.S1_x_at1/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.26043.1.S1_at1/118+12793890..12796330hypothetical protein
LOC_Os08g21480NANA8+12797622..12800940retrotransposon protein, putative, unclassified
LOC_Os08g21490NANA8+12801288..12804504hypothetical protein
LOC_Os08g21500NANA8+12807539..12809237hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23458.1.S1_x_at--1042--7311Chr08:12790676..12790700 (25 bp)
GTGCTCATTTGCAGCAATTTGTGGA
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--605--3111Chr08:12790691..12790715 (25 bp)
AATTTGTGGAAAGCCATAGCACGTA
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--737--10231Chr08:12790693..12790717 (25 bp)
TTTGTGGAAAGCCATAGCACGTATA
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--911--2615Chr10:12148129..12148381 (25 bp)
AACCGTGCAACGGATCACCTGGATG
LOC_Os10g24360
OsAffx.23458.1.S1_x_at--842--3731Chr08:12791063..12791087 (25 bp)
CTCAAGAATAGTCAGATGCCAACCA
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--407--3231Chr08:12791065..12791089 (25 bp)
CAAGAATAGTCAGATGCCAACCAAT
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--374--8531Chr08:12791257..12791281 (25 bp)
TGGACTTCCACACGACATGTGAGGT
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--192--7832Chr08:12791295..12791319 (25 bp)
GGTCACTCTGGGATGGATTGCCCGA
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--317--6591Chr08:12791310..12791334 (25 bp)
GATTGCCCGAAAACCCATGAGAACG
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--45--4191Chr08:12791314..12791338 (25 bp)
GCCCGAAAACCCATGAGAACGTTAT
LOC_Os08g21470
OsAffx.23458.1.S1_x_at--578--6451Chr08:12791407..12791431 (25 bp)
GATCAAGAATGGACCAAACACAAGG
LOC_Os08g21470
Target Sequence 
GTGCTCATTTGCAGCAATTTGTGGAAAGCCATAGCACGTATACCGTCAGAAGAATCAGACTCCAACTGTTGCCGTTCTCC
CTCCTCGAGAGAGCAGAACAGTGGTTCTACATCAACCGTGCAACGGATCACCTGGATGCTGCTGCTGGAGGGACATTCTT
CTCAAGAATAGTCAGATGCCAACCAATTGAGAAGATGGTCTCAAATATGGGTTGGAGCGAGGAACGACTCCAAACCCGTC
AATGCGGCATGTACACCGTCAAGAGGACGGAGATGCTCGCCGCCCAGTTGGATCTCCTTATGAAGAGACTAGACAACAAT
GAGAAGGATAACAAGCAGGGTACCGTTAAAGCCCTGGACTTCCACACGACATGTGAGGTCTATGGCAACACCGGTCACTC
TGGGATGGATTGCCCGAAAACCCATGAGAACGTTATGCTCATGAACAATAACAATGGGTATCGTCCACGAGGAGACCAAG
GATGGAGCATTTCTCCATGGGGTAGATCAAGAATGGACCAAACACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23458.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis