Browse Element(s) Details


Os.52323.1.S1_at

Description gb:AK066394.1
DB_XREF= gi:32976412
TID=Os.52323.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061E17, full insert sequence.
FL= gb:AK066394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g189802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g233302/11retrotransposon protein, putative, unclassified
LOC_Os03g417802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g278201/11hypothetical protein
LOC_Os10g071601/11hypothetical protein
LOC_Os12g163101/11Transposable element protein, putative, Retrotrans_gag
LOC_Os02g174401/11hypothetical protein
LOC_Os08g214201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18910NANA4+10489047..10492261retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18920NANA4+10496318..10498791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18930OsAffx.31777.2.S1_x_at1/114+10499843..10501424hypothetical protein
LOC_Os04g18940Os.51501.1.S2_x_at1/114+10503972..10505981hypothetical protein
LOC_Os04g18950Os.40531.1.A1_x_at1/114+10508065..10508301hypothetical protein
LOC_Os04g18960OsAffx.31869.2.S1_at1/114+10511173..10511886retrotransposon protein, putative, unclassified
LOC_Os04g18970NANA4+10515867..10516205hypothetical protein
LOC_Os04g18980Os.46610.1.S1_x_at5/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.52323.1.S1_at2/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.53292.1.S1_x_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.23633.1.A1_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.53292.1.S1_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.54151.1.S1_x_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18990NANA4+10530472..10531963hypothetical protein
LOC_Os04g19000Os.45976.1.S1_x_at1/114+10534993..10538383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g19010OsAffx.30405.1.S1_x_at1/114+10540302..10540589hypothetical protein
LOC_Os04g19020Os.53142.1.S1_at2/114+10542721..10543932hypothetical protein
LOC_Os04g19030NANA4+10545572..10545901hypothetical protein
LOC_Os04g19040NANA4+10548582..10549931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19050NANA4+10553032..10553361hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52323.1.S1_at--76--90321Chr12:8570899..8570923 (25 bp)
TGCAGATGATAAACCCTGAAGTTGG
NONE
Os.52323.1.S1_at--275--8074Chr12:8570946..8570970 (25 bp)
GGAGAATTATGTATCCATGCAAGGA
NONE
Os.52323.1.S1_at--961--1111Chr09:2321396..2321420 (25 bp)
AGTGAATCAACTCAAAACTCCGAGA
NONE
Os.52323.1.S1_at--297--1451Chr09:2321444..2321468 (25 bp)
AGAAGATGGGCCAAGGGCTAGACCA
NONE
Os.52323.1.S1_at--368--68733Chr12:11893265..11893286 (22 bp)
GTTTGGCGTGGACGCTCCAGATCAC
NONE
Os.52323.1.S1_at--702--7571Chr09:2321565..2321589 (25 bp)
GGGCAGTTCAGACATTACCCCTTCG
NONE
Os.52323.1.S1_at--949--4391Chr09:2321589..2321613 (25 bp)
GCCAACCGTCATACCTAACTCTATA
NONE
Os.52323.1.S1_at--210--3699Chr12:11682877..11682900 (24 bp)
CTATATAAAGGCTTCACTCCCTCAT
NONE
Os.52323.1.S1_at--599--2191Chr09:2321641..2321665 (25 bp)
ACACACTTTCAAGCTTGACCTGAAT
NONE
Os.52323.1.S1_at--906--60918Chr10:12164866..12164889 (24 bp)
GAGTCAGAAGAATTCCGGAGTTGTC
NONE
Os.52323.1.S1_at--1004--71766Chr12:11683015..11683039 (25 bp)
GTCGGTAATCTTCTCCTATTTCTTT
NONE
Target Sequence 
TGCAGATGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAAGGAGGGGTTATG
AACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGTGAATCAACTCAAAACTCCGAGAAATG
GATAAAGGAGGTCCAGGGGAGAAGATGGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGA
TCACCGTTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTTCAGACATTACCC
CTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCATTTCACACACACACTTTCAAGCTTGACCTGAA
TTATAAGAGGCTCTATTGTACTATATTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTG
TCGGTAATCTTCTCCTATTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis