Browse Element(s) Details


Os.23633.1.A1_at

Description gb:CA760159
DB_XREF= gi:25804198
DB_XREF=BR060009A10E10.ab1
CLONE=BR060009A10E10.ab1
TID=Os.23633.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23633 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g278201/11hypothetical protein
LOC_Os04g189801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_s_at11/112+16479491..16480909hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_at2/112+16479491..16480909hypothetical protein
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23633.1.A1_at--547--4171NONE
CCCAACCATAAGTCAATCAGCCGAT
NONE
Os.23633.1.A1_at--92--1171NONE
AGTCAATCAGCCGATGTCGAGGACC
NONE
Os.23633.1.A1_at--72--3231NONE
CAAGTCCCCGGAGTAGAGCAATAGA
NONE
Os.23633.1.A1_at--997--3091NONE
AATAGAGGAGGTCCCCAGCCGAAAT
NONE
Os.23633.1.A1_at--517--7891NONE
GGTTCGGCAGAACCAACCAATCCTG
NONE
Os.23633.1.A1_at--1129--1691NONE
ACCAATCCTGGTGCCGTTGGATCCA
NONE
Os.23633.1.A1_at--671--7837Chr11:14377162..14377181 (20 bp)
GGTAAACGTCTAGGATTGCATCCCA
NONE
Os.23633.1.A1_at--1004--8596Chr11:21124698..21124717 (20 bp)
TGGTCGGAGGGCACTTCAGACAATT
NONE
Os.23633.1.A1_at--1036--99320Chr12:11615531..11615550 (20 bp)
TACCTACCCCTATATAAGGAGCTCA
NONE
Os.23633.1.A1_at--675--9771NONE
TAAGGAGCTCACTCTTTTCACTTCA
NONE
Os.23633.1.A1_at--1054--9611Chr04:10556889..10556908 (20 bp)
TCAGGAGTCCGGAAGTTTTCGAAAG
NONE
Target Sequence 
CCCAACCATAAGTCAATCAGCCGATGTCGAGGACCAGACATATGTATGAATGGGCCAAGAACTCAAAATTCACATTATGA
ATTGGGCCAAAATTCCCAAGTCCCCGGAGTAGAGCAATAGAGGAGGTCCCCAGCCGAAATTGGGCTGGATTGGGCCAGCC
CCAGGTTCGGCAGAACCAACCAATCCTGGTGCCGTTGGATCCAGGTTTTGGGGTAAACGTCTAGGATTGCATCCCAATGA
TGGTCGGAGGGCACTTCAGACAATTCCCCTTCCACAACCGTCATACCTACCCCTATATAAGGAGCTCACTCTTTTCACTT
CAACACACACCTCAAGCAAGAGCTCTCTCATTCCTCTCAAGTATAGTTTAGTAGTATCTAGCTGGTGGAATAGAATTAGA
ATAGGAATCAGGAGTCCGGAAGTTTTCGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23633.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis