Browse Element(s) Details


OsAffx.24468.1.S1_at

Description tigr:9630.m02652
TID=OsAffx.24468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to calcineurin B-like protein 6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2788010/11EF hand family protein
LOC_Os02g278201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_s_at11/112+16479491..16480909hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_at2/112+16479491..16480909hypothetical protein
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein
LOC_Os02g27880OsAffx.24468.1.S1_at10/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.24466.1.S1_x_at2/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.25325.1.S1_at1/112+16495886..16501371EF hand family protein
LOC_Os02g27890NANA2+16503874..16504341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27900OsAffx.12240.1.S1_at10/112+16508771..16509758hypothetical protein
LOC_Os02g27910OsAffx.24469.1.S1_x_at1/112+16511719..16512318hypothetical protein
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.1.S1_at8/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.5.S1_x_at6/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.4.S1_x_at2/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.3.S1_s_at1/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27940OsAffx.24466.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27940OsAffx.8338.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24468.1.S1_at--1101--891NONE
AGGCGAGACGCCAAGTCAAGTCTGA
NONE
OsAffx.24468.1.S1_at--890--6051Chr02:16497558..16497582 (25 bp)
GAGATTGATCAATCGCGAGATGGCG
LOC_Os02g27880
OsAffx.24468.1.S1_at--541--6471Chr02:16497588..16497612 (25 bp)
GATACTAGCACATTGGCTATCGGAC
LOC_Os02g27880
OsAffx.24468.1.S1_at--283--31Chr02:16497599..16497623 (25 bp)
ATTGGCTATCGGACATGGCCGGGTT
LOC_Os02g27880
OsAffx.24468.1.S1_at--721--2372Chr02:16497640..16497664 (25 bp)
AAACCGTGATGAGTTGCTGCAACCC
LOC_Os02g27880
OsAffx.24468.1.S1_at--613--6671Chr02:16497652..16497676 (25 bp)
GTTGCTGCAACCCTATACTTAGCTA
LOC_Os02g27880
OsAffx.24468.1.S1_at--735--9891Chr02:16497667..16497691 (25 bp)
TACTTAGCTACAGCAATGATGGCCC
LOC_Os02g27880
OsAffx.24468.1.S1_at--245--2351Chr02:16497718..16497858 (25 bp)
AAACCATATTTGTCGCCAATGAGAT
LOC_Os02g27880
OsAffx.24468.1.S1_at--237--4391Chr02:16497849..16497873 (25 bp)
CCAATGAGATCGAAGCCTTGTATGA
LOC_Os02g27880
OsAffx.24468.1.S1_at--1059--5651Chr02:16498972..16498996 (25 bp)
GACATGAAGCATGAACAAGCTCTCG
LOC_Os02g27880
OsAffx.24468.1.S1_at--794--8931Chr02:16499037..16499061 (25 bp)
TGACGCTCCCATTCATGACAAGATT
LOC_Os02g27880
Target Sequence 
AGGCGAGACGCCAAGTCAAGTCTGAGATTGATCAATCGCGAGATGGCGGCGGCGATACTAGCACATTGGCTATCGGACAT
GGCCGGGTTGGTGATGAGCTGCTGCAAACCGTGATGAGTTGCTGCAACCCTATACTTAGCTACAGCAATGATGGCCCCCA
AAACCCGGAAGCTCTAACCATCCAAACCATATTTGTCGCCAATGAGATCGAAGCCTTGTATGAGCTTTTCAAGAGGATCG
ATGGTGCCATAATCGAAGATGGCAAGATCAACAAGGTATTCGATTTGTTTGACATGAAGCATGAACAAGCTCTCGGATTT
GAAGAGCTTGCAGTAGCTTTATCCATCTTCCATCCTGACGCTCCCATTCATGACAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis