Browse Element(s) Details


OsAffx.21264.1.S1_at

Description gb:NM_193278.1
DB_XREF= gi:34913639
GEN=B1166B08.22
TID=OsAffx.21264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1166B08.22 (B1166B08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g155502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g113902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g310101/11retrotransposon protein, putative, unclassified
LOC_Os02g279201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein
LOC_Os11g15520Os.57100.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15520OsAffx.18866.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15530OsAffx.18867.1.S1_at11/1111+8797691..8798201hypothetical protein
LOC_Os11g15540NANA11+8799316..8802259hypothetical protein
LOC_Os11g15550OsAffx.10020.1.S1_x_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_x_at1/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15570Os.49352.1.S1_at11/1111+8820635..8822141expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21264.1.S1_at--1034--4538Chr12:21004035..21004061 (25 bp)
GCGTCAGCGGGTCGGTTTACGGTGG
NONE
OsAffx.21264.1.S1_at--1095--8113Chr01:20103499..20103523 (25 bp)
GGACGGCTGAGATTCATCCATCCAA
NONE
OsAffx.21264.1.S1_at--147--5753Chr01:20103500..20103524 (25 bp)
GACGGCTGAGATTCATCCATCCAAA
NONE
OsAffx.21264.1.S1_at--825--5633Chr01:20103662..20103686 (25 bp)
GACACCTACGCGTAGCGGGCGACAC
NONE
OsAffx.21264.1.S1_at--552--3357Chr08:6685431..6685493 (25 bp)
CACCGGTGACCAAAGTCAAAGCGGC
LOC_Os08g11390
OsAffx.21264.1.S1_at--110--7396Chr08:6685436..6685498 (25 bp)
GTGACCAAAGTCAAAGCGGCGGAGA
LOC_Os08g11390
OsAffx.21264.1.S1_at--229--1571Chr01:20103703..20103765 (25 bp)
ACCAAAGTCAAAGCGGCGGAGACGA
NONE
OsAffx.21264.1.S1_at--988--8671Chr01:20103787..20103811 (25 bp)
TGTTCCGGCGGTCAACGGCGATGAC
NONE
OsAffx.21264.1.S1_at--982--1932Chr12:13415511..13415531 (21 bp)
ACGGCGGCGCAAGGTCTCACGCAGA
NONE
OsAffx.21264.1.S1_at--1094--2891Chr01:20103929..20103953 (25 bp)
AAGGTCTCACGCAGAGGCGGCGCTA
NONE
OsAffx.21264.1.S1_at--732--7811Chr01:20103931..20103955 (25 bp)
GGTCTCACGCAGAGGCGGCGCTACA
NONE
Target Sequence 
GCGTCAGCGGGTCGGTTTACGGTGGACCGGGTGCACGGCGGCGGTTCACGAAAACGGACGGCTGAGATTCATCCATCCAA
AACGGACGGCCAAGATCCATCGGTCCACGACCGGACCACGGCGGACGGCAACGATGACGTCGGCGATGACGTCATCACCG
GTGACGACTCGGCCTCGCGTGCTCGCCGGCGATCGACGGCGCGGCGGCGCAAACGGAGGACACCTACGCGTAGCGGGCGA
CACGGCGAACTCACCGGTGACCAAAGTCAAAGCGGCGGAGACGATCGGGTCGACGACGGCGACGGTGTTCCGGCGGTCAA
CGGCGATGACGAAGGGGCGGACGAGGACGGCGGCGGCTTGGCGACCACGACGGTGACCTCCCCGAGCAGTGACGACGACC
GGAGCGTCGGCGGCGCACGGCTGAAGCGACGGCGGCGACGGCGGCGCAAGGTCTCACGCAGAGGCGGCGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis