Browse Element(s) Details


Os.57100.1.S1_at

Description gb:AK110921.1
DB_XREF= gi:32996130
TID=Os.57100.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D02, full insert sequence.
FL= gb:AK110921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1552011/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15470OsAffx.7119.1.S1_at11/1111+8759232..8759669hypothetical protein
LOC_Os11g15480NANA11+8761741..8762363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15490OsAffx.18864.1.S1_at11/1111+8771037..8771682hypothetical protein
LOC_Os11g15500OsAffx.30994.1.S1_at11/1111+8774339..8777441NB-ARC domain containing protein
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein
LOC_Os11g15520Os.57100.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15520OsAffx.18866.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15530OsAffx.18867.1.S1_at11/1111+8797691..8798201hypothetical protein
LOC_Os11g15540NANA11+8799316..8802259hypothetical protein
LOC_Os11g15550OsAffx.10020.1.S1_x_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_x_at1/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57100.1.S1_at--967--5611Chr11:8789497..8789521 (25 bp)
GACAGACGCTTGTGGTATTTTCTTC
LOC_Os11g15520
Os.57100.1.S1_at--299--7511Chr11:8789486..8789510 (25 bp)
GTGGTATTTTCTTCCGTCTACTGAA
LOC_Os11g15520
Os.57100.1.S1_at--3--9291Chr11:8789477..8789501 (25 bp)
TCTTCCGTCTACTGAAAAAACTAGT
LOC_Os11g15520
Os.57100.1.S1_at--143--9891Chr11:8789446..8789470 (25 bp)
TACATAGATGAACCCTGCGTATATC
LOC_Os11g15520
Os.57100.1.S1_at--159--8991Chr11:8789438..8789462 (25 bp)
TGAACCCTGCGTATATCATGATTTT
LOC_Os11g15520
Os.57100.1.S1_at--771--7671Chr11:8789402..8789426 (25 bp)
GGGTTGAATTATTGACCTCAGGCAA
LOC_Os11g15520
Os.57100.1.S1_at--760--10751Chr11:8789391..8789415 (25 bp)
TTGACCTCAGGCAAGCAACTCTGTA
LOC_Os11g15520
Os.57100.1.S1_at--736--5151Chr11:8789377..8789401 (25 bp)
GCAACTCTGTATTCTCTATCACTTA
LOC_Os11g15520
Os.57100.1.S1_at--422--9551Chr11:8789363..8789387 (25 bp)
TCTATCACTTAATTGTACGTGCAGT
LOC_Os11g15520
Os.57100.1.S1_at--1062--6991Chr11:8789349..8789373 (25 bp)
GTACGTGCAGTAGGTCTCATCTATT
LOC_Os11g15520
Os.57100.1.S1_at--542--6931Chr11:8789340..8789364 (25 bp)
GTAGGTCTCATCTATTTATTAGTTT
LOC_Os11g15520
Target Sequence 
GACAGACGCTTGTGGTATTTTCTTCCGTCTACTGAAAAAACTAGTATAAAATACATAGATGAACCCTGCGTATATCATGA
TTTTAAGGATCACGGGGGTTGAATTATTGACCTCAGGCAAGCAACTCTGTATTCTCTATCACTTAATTGTACGTGCAGTA
GGTCTCATCTATTTATTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis