Browse Element(s) Details


OsAffx.18865.1.S1_at

Description tigr:9639.m01440
TID=OsAffx.18865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1551011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15450NANA11+8750710..8754780retrotransposon protein, putative, unclassified
LOC_Os11g15460OsAffx.30993.1.S1_at11/1111+8756938..8758306Ank repeat PF|00023 containing protein, putative
LOC_Os11g15470OsAffx.7119.1.S1_at11/1111+8759232..8759669hypothetical protein
LOC_Os11g15480NANA11+8761741..8762363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15490OsAffx.18864.1.S1_at11/1111+8771037..8771682hypothetical protein
LOC_Os11g15500OsAffx.30994.1.S1_at11/1111+8774339..8777441NB-ARC domain containing protein
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein
LOC_Os11g15520Os.57100.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15520OsAffx.18866.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15530OsAffx.18867.1.S1_at11/1111+8797691..8798201hypothetical protein
LOC_Os11g15540NANA11+8799316..8802259hypothetical protein
LOC_Os11g15550OsAffx.10020.1.S1_x_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_x_at1/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18865.1.S1_at--589--9551Chr11:8778998..8779022 (25 bp)
TCTTTCGGCGATAACATTGTCCTGT
LOC_Os11g15510
OsAffx.18865.1.S1_at--1041--231Chr11:8778968..8778992 (25 bp)
ATATACACGGACTTGCACTTGCGAA
LOC_Os11g15510
OsAffx.18865.1.S1_at--1039--5611Chr11:8778935..8778959 (25 bp)
GACAACGAGGCCACTGGTGCAGAGA
LOC_Os11g15510
OsAffx.18865.1.S1_at--879--5051Chr11:8778895..8778919 (25 bp)
GCAGCACTGCTGATATCATGGACAT
LOC_Os11g15510
OsAffx.18865.1.S1_at--755--2531Chr11:8778854..8778878 (25 bp)
AACTACATTGTCTACCTCTTGGTTG
LOC_Os11g15510
OsAffx.18865.1.S1_at--603--1671Chr11:8778826..8778850 (25 bp)
AGCCTTCCATGTTGCCACTTAGTGG
LOC_Os11g15510
OsAffx.18865.1.S1_at--582--1091Chr11:8778806..8778830 (25 bp)
AGTGGCGCTGCCGATGACACAACAG
LOC_Os11g15510
OsAffx.18865.1.S1_at--126--5631Chr11:8778791..8778815 (25 bp)
GACACAACAGCAGCATTCTACGAGA
LOC_Os11g15510
OsAffx.18865.1.S1_at--194--8051Chr11:8778729..8778753 (25 bp)
GGAGACCTGTTACCAGCTAGTGGAA
LOC_Os11g15510
OsAffx.18865.1.S1_at--310--6291Chr11:8778491..8778515 (25 bp)
GATGTTGCACACCAGGTTGACTTGA
LOC_Os11g15510
OsAffx.18865.1.S1_at--639--9991Chr11:8778459..8778483 (25 bp)
TAGCGAGACGATGTCCAGGCAGTTT
LOC_Os11g15510
Target Sequence 
TCTTTCGGCGATAACATTGTCCTGTTGCATATATACACGGACTTGCACTTGCGAAAACAGCCTGACAACGAGGCCACTGG
TGCAGAGAGCGAGACGGCATCAAGCAGCACTGCTGATATCATGGACATATGCAGAAAGATATCCAACTACATTGTCTACC
TCTTGGTTGCCCAGCCTTCCATGTTGCCACTTAGTGGCGCTGCCGATGACACAACAGCAGCATTCTACGAGAAGATCAGC
AAGAAAGGAAGTAGCAAACAGGATGTTCTGGAGACCTGTTACCAGCTAGTGGAAGATCAGCTGGAGTTTGGTTACGAAGA
ATGCCTGAAAGAGCAAGAACAACCTGGGCCGTGGTGCGAGACGCTGATGGAGATCAGAGATATGTGGCTGAGGCTCCTCA
TTTACATTGCCGGCAAGTGCCAGGTAGAGCTGCACGCGCAGCAGCTGGGCAGAGGAGGGGAGCTCCTCACCTTCGTCTGG
TTGCTCATGGCGCATCATGACATTGGAGATGTTGCACACCAGGTTGACTTGATAACTAGTAGCGAGACGATGTCCAGGCA
GTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis