Browse Element(s) Details


OsAffx.18867.1.S1_at

Description tigr:9639.m01442
TID=OsAffx.18867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1553011/11hypothetical protein
LOC_Os04g031001/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15500OsAffx.30994.1.S1_at11/1111+8774339..8777441NB-ARC domain containing protein
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein
LOC_Os11g15520Os.57100.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15520OsAffx.18866.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15530OsAffx.18867.1.S1_at11/1111+8797691..8798201hypothetical protein
LOC_Os11g15540NANA11+8799316..8802259hypothetical protein
LOC_Os11g15550OsAffx.10020.1.S1_x_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_x_at1/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15570Os.49352.1.S1_at11/1111+8820635..8822141expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18867.1.S1_at--1134--1971Chr11:8798147..8798171 (25 bp)
ACTGCATGTGCTCTCATCTTTGCTA
LOC_Os11g15530
OsAffx.18867.1.S1_at--663--3511Chr11:8798143..8798167 (25 bp)
CATGTGCTCTCATCTTTGCTATGAT
LOC_Os11g15530
OsAffx.18867.1.S1_at--1086--7311Chr11:8798140..8798164 (25 bp)
GTGCTCTCATCTTTGCTATGATTTT
LOC_Os11g15530
OsAffx.18867.1.S1_at--739--3551Chr11:8798133..8798157 (25 bp)
CATCTTTGCTATGATTTTGGCCTTG
LOC_Os11g15530
OsAffx.18867.1.S1_at--347--9051Chr11:8798110..8798134 (25 bp)
TGCATGGCCCCTGTTTTGCATTGCC
LOC_Os11g15530
OsAffx.18867.1.S1_at--858--3871Chr11:8798100..8798124 (25 bp)
CTGTTTTGCATTGCCCGAAGCACCG
LOC_Os11g15530
OsAffx.18867.1.S1_at--1132--4591Chr11:8797955..8798093 (25 bp)
GCGAAAGAGTTGTACATCGTCTACC
LOC_Os11g15530
OsAffx.18867.1.S1_at--107--2791Chr11:8797951..8797972 (22 bp)
AAGAGTTGTACATCGTCTACCTGGG
LOC_Os11g15530
OsAffx.18867.1.S1_at--936--6191Chr11:8797923..8797947 (25 bp)
GAGGCAACATGAGGATGCTGATCTT
LOC_Os11g15530
OsAffx.18867.1.S1_at--317--8892Chr04:1267807..1267826 (20 bp)
TGAGGATGCTGATCTTGTCACTGCC
LOC_Os04g03100
OsAffx.18867.1.S1_at--875--991Chr11:8797912..8797936 (25 bp)
AGGATGCTGATCTTGTCACTGCCTC
LOC_Os11g15530
Target Sequence 
ACTGCATGTGCTCTCATCTTTGCTATGATTTTGGCCTTGCATGGCCCCTGTTTTGCATTGCCCGAAGCACCGGGGGAAGC
GAAAGAGTTGTACATCGTCTACCTGGGGGAGAGGCAACATGAGGATGCTGATCTTGTCACTGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis