Browse Element(s) Details


OsAffx.21264.1.S1_x_at

Description gb:NM_193278.1
DB_XREF= gi:34913639
GEN=B1166B08.22
TID=OsAffx.21264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1166B08.22 (B1166B08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g310103/11retrotransposon protein, putative, unclassified
LOC_Os05g178302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g113901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g279201/11retrotransposon protein, putative, unclassified
LOC_Os11g155501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g318901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g188301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30960Os.46012.2.S1_x_at7/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.27088.1.A1_x_at5/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.46012.3.S1_x_at4/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30970OsAffx.26069.1.S1_x_at2/1111+17514635..17518000retrotransposon protein, putative, unclassified
LOC_Os11g30980NANA11+17519627..17520073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30990NANA11+17520596..17525003retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g31000OsAffx.7261.1.S1_at11/1111+17533563..17534335hypothetical protein
LOC_Os11g31010Os.38751.1.A1_at6/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.21264.1.S1_x_at3/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.27810.1.S1_x_at1/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.21264.1.S1_at1/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31020NANA11+17539529..17543473transposon protein, putative, Pong sub-class
LOC_Os11g31030OsAffx.19094.1.S1_at11/1111+17549453..17550241hypothetical protein
LOC_Os11g31040OsAffx.7262.1.S1_at11/1111+17552982..17553856hypothetical protein
LOC_Os11g31050NANA11+17560923..17565421retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21264.1.S1_x_at--1033--4538Chr12:21004035..21004061 (25 bp)
GCGTCAGCGGGTCGGTTTACGGTGG
NONE
OsAffx.21264.1.S1_x_at--196--104922Chr12:19663215..19663267 (24 bp)
TTCACGAAAACGGACGGCTGAGATT
NONE
OsAffx.21264.1.S1_x_at--148--5753Chr01:20103500..20103524 (25 bp)
GACGGCTGAGATTCATCCATCCAAA
NONE
OsAffx.21264.1.S1_x_at--698--88911Chr12:14569489..14569512 (24 bp)
TGAGATTCATCCATCCAAAACGGAC
NONE
OsAffx.21264.1.S1_x_at--98--2396Chr07:16829991..16830010 (20 bp)
AAACGGAGGACACCTACGCGTAGCG
NONE
OsAffx.21264.1.S1_x_at--989--2153Chr01:20103663..20103687 (25 bp)
ACACCTACGCGTAGCGGGCGACACG
NONE
OsAffx.21264.1.S1_x_at--111--7396Chr08:6685436..6685498 (25 bp)
GTGACCAAAGTCAAAGCGGCGGAGA
LOC_Os08g11390
OsAffx.21264.1.S1_x_at--150--10672Chr07:14253754..14253841 (25 bp)
TTCCGGCGGTCAACGGCGATGACGA
NONE
OsAffx.21264.1.S1_x_at--200--4215Chr11:20316490..20316514 (25 bp)
CCCCGAGCAGTGACGACGACCGGAG
NONE
OsAffx.21264.1.S1_x_at--983--1932Chr12:13415511..13415531 (21 bp)
ACGGCGGCGCAAGGTCTCACGCAGA
NONE
OsAffx.21264.1.S1_x_at--1093--2891Chr01:20103929..20103953 (25 bp)
AAGGTCTCACGCAGAGGCGGCGCTA
NONE
Target Sequence 
GCGTCAGCGGGTCGGTTTACGGTGGACCGGGTGCACGGCGGCGGTTCACGAAAACGGACGGCTGAGATTCATCCATCCAA
AACGGACGGCCAAGATCCATCGGTCCACGACCGGACCACGGCGGACGGCAACGATGACGTCGGCGATGACGTCATCACCG
GTGACGACTCGGCCTCGCGTGCTCGCCGGCGATCGACGGCGCGGCGGCGCAAACGGAGGACACCTACGCGTAGCGGGCGA
CACGGCGAACTCACCGGTGACCAAAGTCAAAGCGGCGGAGACGATCGGGTCGACGACGGCGACGGTGTTCCGGCGGTCAA
CGGCGATGACGAAGGGGCGGACGAGGACGGCGGCGGCTTGGCGACCACGACGGTGACCTCCCCGAGCAGTGACGACGACC
GGAGCGTCGGCGGCGCACGGCTGAAGCGACGGCGGCGACGGCGGCGCAAGGTCTCACGCAGAGGCGGCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21264.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis