Browse Element(s) Details


OsAffx.7261.1.S1_at

Description tigr:9639.m02809
TID=OsAffx.7261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3100011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30960Os.46012.2.S1_x_at7/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.27088.1.A1_x_at5/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.46012.3.S1_x_at4/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30970OsAffx.26069.1.S1_x_at2/1111+17514635..17518000retrotransposon protein, putative, unclassified
LOC_Os11g30980NANA11+17519627..17520073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30990NANA11+17520596..17525003retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g31000OsAffx.7261.1.S1_at11/1111+17533563..17534335hypothetical protein
LOC_Os11g31010Os.38751.1.A1_at6/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.21264.1.S1_x_at3/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.27810.1.S1_x_at1/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.21264.1.S1_at1/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31020NANA11+17539529..17543473transposon protein, putative, Pong sub-class
LOC_Os11g31030OsAffx.19094.1.S1_at11/1111+17549453..17550241hypothetical protein
LOC_Os11g31040OsAffx.7262.1.S1_at11/1111+17552982..17553856hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7261.1.S1_at--894--3671Chr11:17534275..17534299 (25 bp)
CTTTCTTTCCGTGCCGCAGGAGAGA
LOC_Os11g31000
OsAffx.7261.1.S1_at--955--6011Chr11:17534256..17534280 (25 bp)
GAGAGATGCTGCTGTCCTTGCCGTA
LOC_Os11g31000
OsAffx.7261.1.S1_at--136--5331Chr11:17533834..17533858 (25 bp)
GAAGTGGCAGCTCAACTGTTACGTT
LOC_Os11g31000
OsAffx.7261.1.S1_at--975--1571Chr11:17533826..17533850 (25 bp)
AGCTCAACTGTTACGTTCTACACCA
LOC_Os11g31000
OsAffx.7261.1.S1_at--260--2171Chr11:17533807..17533831 (25 bp)
ACACCACCATGGAACTCAACGCATG
LOC_Os11g31000
OsAffx.7261.1.S1_at--1025--2531Chr11:17533795..17533819 (25 bp)
AACTCAACGCATGGGAGATCCAGCA
LOC_Os11g31000
OsAffx.7261.1.S1_at--934--6351Chr11:17533779..17533803 (25 bp)
GATCCAGCAGTTGAATCACTTCTTG
LOC_Os11g31000
OsAffx.7261.1.S1_at--864--5031Chr11:17533773..17533797 (25 bp)
GCAGTTGAATCACTTCTTGCAGGAA
LOC_Os11g31000
OsAffx.7261.1.S1_at--297--511Chr11:17533700..17533724 (25 bp)
ATCGTCCGCGACGTGGGACGAACAA
LOC_Os11g31000
OsAffx.7261.1.S1_at--756--9111Chr11:17533642..17533666 (25 bp)
TGCTGCTGCGCCTGGACAAGACGCG
LOC_Os11g31000
OsAffx.7261.1.S1_at--194--4571Chr11:17533594..17533618 (25 bp)
GCGCCGATCGCCTTTGGGAGATCAT
LOC_Os11g31000
Target Sequence 
CTTTCTTTCCGTGCCGCAGGAGAGATGCTGCTGTCCTTGCCGTACCTCTTGCCGGGGCAGCCGGGAAGAAGTGGCAGCTC
AACTGTTACGTTCTACACCACCATGGAACTCAACGCATGGGAGATCCAGCAGTTGAATCACTTCTTGCAGGAAGGACAGG
GAATAGCGAGGGAGGTGCTGAGGGCGAAGCTGCCGGACGACATCGTCCGCGACGTGGGACGAACAAGGAGGGAAGCTCTG
GTGCTGAGGCTGTACGATCTGCTGCTGCGCCTGGACAAGACGCGCGTCAGCCGCGGCGGCCGTGTGTGCGCCGATCGCCT
TTGGGAGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis