Browse Element(s) Details


OsAffx.7262.1.S1_at

Description tigr:9639.m02814
TID=OsAffx.7262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3104011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31000OsAffx.7261.1.S1_at11/1111+17533563..17534335hypothetical protein
LOC_Os11g31010Os.38751.1.A1_at6/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.21264.1.S1_x_at3/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.27810.1.S1_x_at1/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31010OsAffx.21264.1.S1_at1/1111+17535108..17537320retrotransposon protein, putative, unclassified
LOC_Os11g31020NANA11+17539529..17543473transposon protein, putative, Pong sub-class
LOC_Os11g31030OsAffx.19094.1.S1_at11/1111+17549453..17550241hypothetical protein
LOC_Os11g31040OsAffx.7262.1.S1_at11/1111+17552982..17553856hypothetical protein
LOC_Os11g31050NANA11+17560923..17565421retrotransposon protein, putative, unclassified
LOC_Os11g31060OsAffx.19095.1.S1_at11/1111+17567492..17569027BAG domain containing protein, expressed
LOC_Os11g31070OsAffx.31236.1.S1_at11/1111+17573475..17574219hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7262.1.S1_at--777--6731Chr11:17553798..17553822 (25 bp)
GTTCTTTCCGTGCAGCAGCAGGGAA
LOC_Os11g31040
OsAffx.7262.1.S1_at--586--1511Chr11:17553782..17553806 (25 bp)
AGCAGGGAAGCTGCTGGCCTTGTCC
LOC_Os11g31040
OsAffx.7262.1.S1_at--217--7511Chr11:17553272..17553763 (25 bp)
GGGTTGCCCTTCTCCTTGGAGGAGC
LOC_Os11g31040
OsAffx.7262.1.S1_at--105--5331Chr11:17553244..17553268 (25 bp)
GAAGTGGCAGCGCTACGACTGTCAC
LOC_Os11g31040
OsAffx.7262.1.S1_at--569--5071Chr11:17553238..17553262 (25 bp)
GCAGCGCTACGACTGTCACGTACTA
LOC_Os11g31040
OsAffx.7262.1.S1_at--786--8732Chr03:29021962..29021996 (24 bp)
TGTCACGTACTACTCCACCATGGAA
NONE
OsAffx.7262.1.S1_at--213--9911Chr11:17553215..17553239 (25 bp)
TACTCCACCATGGAACTGAACGGGT
LOC_Os11g31040
OsAffx.7262.1.S1_at--1127--6131Chr11:17553188..17553212 (25 bp)
GAGGTGCAGAAGTTGGACCGCTTCT
LOC_Os11g31040
OsAffx.7262.1.S1_at--567--2811Chr11:17553179..17553203 (25 bp)
AAGTTGGACCGCTTCTTGCAGGAAG
LOC_Os11g31040
OsAffx.7262.1.S1_at--531--9111Chr11:17553052..17553076 (25 bp)
TGCTGCGCTTGGACGCGACGCACGT
LOC_Os11g31040
OsAffx.7262.1.S1_at--321--8631Chr11:17553012..17553036 (25 bp)
TGTGTGCGCTGATCGTCTTTGGGAC
LOC_Os11g31040
Target Sequence 
GTTCTTTCCGTGCAGCAGCAGGGAAGCTGCTGGCCTTGTCCTTGTCCGACCTCTCGGCCGGGTTGCCCTTCTCCTTGGAG
GAGCCGGGAAGTGGCAGCGCTACGACTGTCACGTACTACTCCACCATGGAACTGAACGGGTGGGAGGTGCAGAAGTTGGA
CCGCTTCTTGCAGGAAGGACAGGGAATGGCGAGGGAGGTGATGAGGGAGAAGCCGGACGACTTCGTCCGCGACGAGACAA
GGAGGGAATTTCTGGTGCTGAGGCTGTACGATCATCTGCTGCTGCGCTTGGACGCGACGCACGTCAGCCGCGCCGGCCGT
GTGTGCGCTGATCGTCTTTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis