Browse Element(s) Details


OsAffx.19095.1.S1_at

Description tigr:9639.m02816
TID=OsAffx.19095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BAG domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3106011/11BAG domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31020NANA11+17539529..17543473transposon protein, putative, Pong sub-class
LOC_Os11g31030OsAffx.19094.1.S1_at11/1111+17549453..17550241hypothetical protein
LOC_Os11g31040OsAffx.7262.1.S1_at11/1111+17552982..17553856hypothetical protein
LOC_Os11g31050NANA11+17560923..17565421retrotransposon protein, putative, unclassified
LOC_Os11g31060OsAffx.19095.1.S1_at11/1111+17567492..17569027BAG domain containing protein, expressed
LOC_Os11g31070OsAffx.31236.1.S1_at11/1111+17573475..17574219hypothetical protein
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19095.1.S1_at--738--4231Chr11:17568039..17568063 (25 bp)
CCGAGACGGAGAAAGCGGTCGAACA
LOC_Os11g31060
OsAffx.19095.1.S1_at--850--8631Chr11:17567965..17567989 (25 bp)
TGGGAGATGGTGACTGCAGAATCCC
LOC_Os11g31060
OsAffx.19095.1.S1_at--101--9031Chr11:17567951..17567975 (25 bp)
TGCAGAATCCCCTTTGGAGGCCGCC
LOC_Os11g31060
OsAffx.19095.1.S1_at--126--7791Chr11:17567873..17567897 (25 bp)
GGTCGACGAACCGGCGGTCCAAGAT
LOC_Os11g31060
OsAffx.19095.1.S1_at--3--5891Chr11:17567777..17567801 (25 bp)
GAGCGCGCAGCAGTGCGCGGTGATC
LOC_Os11g31060
OsAffx.19095.1.S1_at--156--5431Chr11:17567656..17567680 (25 bp)
GAAGCCAAGGCGAACAGCTAGTCCA
LOC_Os11g31060
OsAffx.19095.1.S1_at--613--891Chr11:17567649..17567673 (25 bp)
AGGCGAACAGCTAGTCCATCCGAAG
LOC_Os11g31060
OsAffx.19095.1.S1_at--779--10051Chr11:17567638..17567662 (25 bp)
TAGTCCATCCGAAGCTGCTACAGCG
LOC_Os11g31060
OsAffx.19095.1.S1_at--78--4751Chr11:17567625..17567649 (25 bp)
GCTGCTACAGCGATTGAATAAACAA
LOC_Os11g31060
OsAffx.19095.1.S1_at--590--10051Chr11:17567590..17567614 (25 bp)
TAGTTCTTAGCTTTTGGAGTTGGAC
LOC_Os11g31060
OsAffx.19095.1.S1_at--317--3671Chr11:17567585..17567609 (25 bp)
CTTAGCTTTTGGAGTTGGACAGACA
LOC_Os11g31060
Target Sequence 
CCGAGACGGAGAAAGCGGTCGAACAGGTGGTGGGCGGAGAGATGCAGGAGGCGGAGGAAGAGGCGGAAGGCGAGTGGGAG
ATGGTGACTGCAGAATCCCCTTTGGAGGCCGCCGCCGCCGACGACGACGTGGAGGCCGTGGAGAGCTCGGCGGCGCCCGC
TGCGCGGGTCGACGAACCGGCGGTCCAAGATGAGGAGAAAGAGAAGGAGGAGGGGGTGGAGATGAAGAAGGTGATGGAGA
TGGTGGCGGCGCTGTGCGAGCGGAGCGCGCAGCAGTGCGCGGTGATCGGCGCGCTGGCGGAGCGGGTGGACGCGCTGGAG
CGCGCCGTGCGGCGGGTGGAGGAGAGCGACCGGCGGCGCCGCCGCAACAAGAAGCTCAAGAAGGAAGCCAAGGCGAACAG
CTAGTCCATCCGAAGCTGCTACAGCGATTGAATAAACAAGAGTTTTTTTTAGTTCTTAGCTTTTGGAGTTGGACAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis