Browse Element(s) Details


OsAffx.31236.1.S1_at

Description tigr:9639.m02817
TID=OsAffx.31236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3107011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31030OsAffx.19094.1.S1_at11/1111+17549453..17550241hypothetical protein
LOC_Os11g31040OsAffx.7262.1.S1_at11/1111+17552982..17553856hypothetical protein
LOC_Os11g31050NANA11+17560923..17565421retrotransposon protein, putative, unclassified
LOC_Os11g31060OsAffx.19095.1.S1_at11/1111+17567492..17569027BAG domain containing protein, expressed
LOC_Os11g31070OsAffx.31236.1.S1_at11/1111+17573475..17574219hypothetical protein
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31236.1.S1_at--63--10631Chr11:17574107..17574131 (25 bp)
TTCGATATTTCTTGGTGCGTTTCCC
LOC_Os11g31070
OsAffx.31236.1.S1_at--790--10571Chr11:17574082..17574106 (25 bp)
TTCTCCGAAGCGTGCACAGCATATG
LOC_Os11g31070
OsAffx.31236.1.S1_at--608--2151Chr11:17574067..17574091 (25 bp)
ACAGCATATGGATCCTGCGCGTGAG
LOC_Os11g31070
OsAffx.31236.1.S1_at--42--6171Chr11:17574016..17574040 (25 bp)
GAGGATTGATCAACTCGCCCATGGA
LOC_Os11g31070
OsAffx.31236.1.S1_at--1041--9331Chr11:17573767..17574026 (25 bp)
TCGCCCATGGATTGATGGACCCCAA
LOC_Os11g31070
OsAffx.31236.1.S1_at--907--831Chr11:17573753..17573775 (23 bp)
ATGGACCCCAACAAGATGAGCTACG
LOC_Os11g31070
OsAffx.31236.1.S1_at--390--9931Chr11:17573732..17573756 (25 bp)
TACGAGGTGTCCATGGAACCCACGG
LOC_Os11g31070
OsAffx.31236.1.S1_at--270--7651Chr11:17573704..17573728 (25 bp)
GGGAGATGCAGGACACCCACCTCGT
LOC_Os11g31070
OsAffx.31236.1.S1_at--286--3371Chr11:17573687..17573711 (25 bp)
CACCTCGTTCTGATGGAGGGCCAGA
LOC_Os11g31070
OsAffx.31236.1.S1_at--119--7791Chr11:17573649..17573673 (25 bp)
GGTGCTGCGTACGACTGCGGATCCC
LOC_Os11g31070
OsAffx.31236.1.S1_at--828--5791Chr11:17573573..17573597 (25 bp)
GACGCTCTGCTGTTGCGCCTGGAAG
LOC_Os11g31070
Target Sequence 
TTCGATATTTCTTGGTGCGTTTCCCTTCTCCGAAGCGTGCACAGCATATGGATCCTGCGCGTGAGCCAGCACGGGTGCTA
CGGGGGATCAAGAGGATTGATCAACTCGCCCATGGATTGATGGACCCCAACAAGATGAGCTACGAGGTGTCCATGGAACC
CACGGGGTGGGAGATGCAGGACACCCACCTCGTTCTGATGGAGGGCCAGAGCATCGCCGGGGTGGTGCTGCGTACGACTG
CGGATCCCGGCGGCGGCGGCGGCGGCGCGGCGACGAGGACAGCTCTGGCGTGGGAGCTGGACGCTCTGCTGTTGCGCCTG
GAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis