Browse Element(s) Details


OsAffx.19097.1.S1_at

Description tigr:9639.m02820
TID=OsAffx.19097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RGA1 protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g311009/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31070OsAffx.31236.1.S1_at11/1111+17573475..17574219hypothetical protein
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein
LOC_Os11g31130OsAffx.19099.1.S1_at11/1111+17618358..17619124hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19097.1.S1_at--827--2951Chr11:17594755..17594779 (25 bp)
AATGGCCCCTACTTCTTGGGCAGGT
LOC_Os11g31100
OsAffx.19097.1.S1_at--549--9891Chr11:17594462..17594770 (25 bp)
TACTTCTTGGGCAGGTTTTTGGAGG
LOC_Os11g31100
OsAffx.19097.1.S1_at--471--6791Chr11:17594448..17594472 (25 bp)
GTTTTTGGAGGCGTTGCACTACTAC
LOC_Os11g31100
OsAffx.19097.1.S1_at--569--3711Chr11:17594430..17594454 (25 bp)
CTACTACTCGGCGATATTCGACTCG
LOC_Os11g31100
OsAffx.19097.1.S1_at--225--2011Chr11:17594425..17594449 (25 bp)
ACTCGGCGATATTCGACTCGCTGGA
LOC_Os11g31100
OsAffx.19097.1.S1_at--96--1531Chr11:17594359..17594383 (25 bp)
AGCAGTGCCTGCTGGCGCCGGAGAT
LOC_Os11g31100
OsAffx.19097.1.S1_at--1139--1031NONE
AGGTGCTGCTCGGCACTCTACGGCG
NONE
OsAffx.19097.1.S1_at--1050--5731Chr11:17594174..17594198 (25 bp)
GACGGCTACCGCCTAACCGAGGACA
LOC_Os11g31100
OsAffx.19097.1.S1_at--438--4451Chr11:17594164..17594188 (25 bp)
GCCTAACCGAGGACAGCGGCTGCCT
LOC_Os11g31100
OsAffx.19097.1.S1_at--352--1631NONE
AGCGGCTGCCTCACTCCTCGGGTGG
NONE
OsAffx.19097.1.S1_at--826--9671Chr11:17594141..17594162 (22 bp)
TCACTCCTCGGGTGGCAGGACCGCG
LOC_Os11g31100
Target Sequence 
AATGGCCCCTACTTCTTGGGCAGGTTTTTGGAGGCGTTGCACTACTACTCGGCGATATTCGACTCGCTGGACGCGACGTT
CCCGGCGGAGTCGACGGCGAGGATGAAGGTGGAGCAGTGCCTGCTGGCGCCGGAGATACGGAACGTGGTGGCGTGCGAGG
GGGCGGAGCGGGTGGCGCGGCACGAGAGGCTGGAGCGGTGGCGGCGGCTCATGGAAGGGCGAGGGTTCGAGGCCGTGCCG
CTCAGCGCCGCCGCCGTCGGCCAGAGCCAGGTGCTGCTCGGCACTCTACGGCGCCGGCGACGGCTACCGCCTAACCGAGG
ACAGCGGCTGCCTCACTCCTCGGGTGGCAGGACCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis