Browse Element(s) Details


OsAffx.7263.1.S1_at

Description tigr:9639.m02823
TID=OsAffx.7263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g311209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein
LOC_Os11g31130OsAffx.19099.1.S1_at11/1111+17618358..17619124hypothetical protein
LOC_Os11g31140NANA11+17625308..17627089hypothetical protein
LOC_Os11g31150OsAffx.19100.2.S1_at10/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.17914.1.S1_x_at1/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.1436.1.S1_x_at1/1111+17629607..17630502hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7263.1.S1_at--411--1291NONE
AGATCCTCGGGCAGTAGTCTTCGAT
NONE
OsAffx.7263.1.S1_at--438--3991NONE
CGGGCAGTAGTCTTCGATGTCGCCG
NONE
OsAffx.7263.1.S1_at--394--9111Chr11:17612831..17612853 (23 bp)
TGCTGCGGCGTCATGCCGATGCAGT
LOC_Os11g31120
OsAffx.7263.1.S1_at--54--9451Chr11:17612789..17612808 (20 bp)
TCGGCGTCACGTACCAGGAGGAAGC
LOC_Os11g31120
OsAffx.7263.1.S1_at--769--8191Chr11:17612684..17612708 (25 bp)
GGAAGGTGCTCATTCGGAGCTTCTC
LOC_Os11g31120
OsAffx.7263.1.S1_at--862--2731Chr11:17612652..17612676 (25 bp)
AAGAACCTATGTCTCCGGCGGTGAA
LOC_Os11g31120
OsAffx.7263.1.S1_at--312--7171Chr11:17612642..17612666 (25 bp)
GTCTCCGGCGGTGAAGCTAGCAAGT
LOC_Os11g31120
OsAffx.7263.1.S1_at--801--4711Chr11:17612613..17612637 (25 bp)
GCTGGCAGAGCAGCGTGACCTCGAC
LOC_Os11g31120
OsAffx.7263.1.S1_at--475--6911Chr11:17611891..17611915 (25 bp)
GTAGGCCAGTGGGTGATACCAGACA
LOC_Os11g31120
OsAffx.7263.1.S1_at--838--7371Chr11:17611879..17611903 (25 bp)
GTGATACCAGACACCGACAACTCTC
LOC_Os11g31120
OsAffx.7263.1.S1_at--629--4831Chr11:17611848..17611872 (25 bp)
GCTCACGCCTAGAGCGAGGCATCAT
LOC_Os11g31120
Target Sequence 
AGATCCTCGGGCAGTAGTCTTCGATGTCGCCGCCATGCTGCGGCGTCATGCCGATGCAGTGGGCAGGAGTCCGTCCGGAC
CGTCGGCGTCACGTACCAGGAGGAAGCTGGCCGCCGCGCGCGCCGCCATGTCCGCAGTGCGCGCGCTCGCCGAAGCTGAA
CCGGCCAGGAGATGGAGAAGCAGTGGAAGGTGCTCATTCGGAGCTTCTCGCTCGCCAAGAACCTATGTCTCCGGCGGTGA
AGCTAGCAAGTGGCGGCTGGCAGAGCAGCGTGACCTCGACGCCGGAGCCGAGCTCCTCAAGGTAGGCCAGTGGGTGATAC
CAGACACCGACAACTCTCACCGACGCTCACGCCTAGAGCGAGGCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis