Browse Element(s) Details


OsAffx.19099.1.S1_at

Description tigr:9639.m02824
TID=OsAffx.19099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3113011/11hypothetical protein
LOC_Os02g269841/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein
LOC_Os11g31130OsAffx.19099.1.S1_at11/1111+17618358..17619124hypothetical protein
LOC_Os11g31140NANA11+17625308..17627089hypothetical protein
LOC_Os11g31150OsAffx.19100.2.S1_at10/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.17914.1.S1_x_at1/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.1436.1.S1_x_at1/1111+17629607..17630502hypothetical protein
LOC_Os11g31160NANA11+17641431..17645089transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19099.1.S1_at--1139--5971Chr11:17618998..17619022 (25 bp)
GAGACATCCTCCGAAGAGGCGGATT
LOC_Os11g31130
OsAffx.19099.1.S1_at--972--7211Chr11:17618946..17618970 (25 bp)
GTCCTGTCGTGGGAGATCCCCGACG
LOC_Os11g31130
OsAffx.19099.1.S1_at--1033--4251Chr11:17618874..17618898 (25 bp)
CCGGAGCCCCGGAAGCAGATGCTGC
LOC_Os11g31130
OsAffx.19099.1.S1_at--72--9031Chr11:17618823..17618847 (25 bp)
TGCACGAACCTCATCTACGCCAGGA
LOC_Os11g31130
OsAffx.19099.1.S1_at--837--3751Chr11:17618814..17618838 (25 bp)
CTCATCTACGCCAGGAGGAGGGAGA
LOC_Os11g31130
OsAffx.19099.1.S1_at--250--6031Chr11:17618498..17618817 (25 bp)
GAGATGCAGCGTGTGTGCCTATTGT
LOC_Os11g31130
OsAffx.19099.1.S1_at--218--4671Chr11:17618490..17618512 (23 bp)
GCGTGTGTGCCTATTGTTATATTGT
LOC_Os11g31130
OsAffx.19099.1.S1_at--610--31Chr11:17618470..17618494 (25 bp)
ATTGTTATGTGCTACTTACTCCGTC
LOC_Os11g31130
OsAffx.19099.1.S1_at--373--8498Chr10:11598737..11598918 (25 bp)
TGTGCTACTTACTCCGTCCCAAAAT
NONE
OsAffx.19099.1.S1_at--884--10531Chr11:17618436..17618460 (25 bp)
TTGGGTTTGGGCATCCGGTCAAAAT
LOC_Os11g31130
OsAffx.19099.1.S1_at--923--7592Chr05:2341982..2342002 (21 bp)
GGGCATCCGGTCAAAATACCTTATT
NONE
Target Sequence 
GAGACATCCTCCGAAGAGGCGGATTCGGAAGCCGCAGGAGCAGATCGACGCCGTCCTGTCGTGGGAGATCCCCGACGGCG
ACGTGCAGCCCGCCAACATGGAGAGGATCGACGGCCTGTCCATGCCGGAGCCCCGGAAGCAGATGCTGCGCGCCGCTCGC
CTCGGCGTCGCCGCGTGCACGAACCTCATCTACGCCAGGAGGAGGGAGATGCAGCGTGTGTGCCTATTGTTATATTGTTA
TGTGCTACTTACTCCGTCCCAAAATACTTGGGTTTGGGCATCCGGTCAAAATACCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis