Browse Element(s) Details


OsAffx.27810.1.S1_x_at

Description gb:NM_193220.1
DB_XREF= gi:34913523
GEN=OJ1029_F04.13
TID=OsAffx.27810.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1029_F04.13 (OJ1029_F04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g367192/11Lipoxygenase 3, putative, expressed
LOC_Os11g279001/11retrotransposon protein, putative, unclassified
LOC_Os05g206201/11expressed protein
LOC_Os01g479801/11retrotransposon protein, putative, unclassified
LOC_Os05g159401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g098901/11retrotransposon protein, putative, unclassified
LOC_Os11g262301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g291901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g278341/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g310101/11retrotransposon protein, putative, unclassified
LOC_Os12g216001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g441801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g279201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36670OsAffx.19198.1.S1_at11/1111+21147686..21149007hypothetical protein
LOC_Os11g36670OsAffx.19197.1.S1_at2/1111+21147686..21149007hypothetical protein
LOC_Os11g36690OsAffx.31329.1.S1_at11/1111+21164045..21165849hypothetical protein
LOC_Os11g36700NANA11+21170341..21171655glycosyltransferase, putative
LOC_Os11g36719Os.6031.1.S1_at10/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_x_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719Os.52574.2.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.20020.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.5809.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36740OsAffx.31331.1.S1_at10/1111+21186130..21189758expressed protein
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27810.1.S1_x_at--1020--53343Chr12:9635923..9635947 (25 bp)
GAAGTACCACCACGGCACTGCAAAG
NONE
OsAffx.27810.1.S1_x_at--593--11741Chr12:9635925..9635949 (25 bp)
AGTACCACCACGGCACTGCAAAGGG
NONE
OsAffx.27810.1.S1_x_at--76--7636Chr12:11843324..11843348 (25 bp)
GGGAAAATCGTGACAATACCCTTCG
NONE
OsAffx.27810.1.S1_x_at--811--5516Chr12:11843326..11843350 (25 bp)
GAAAATCGTGACAATACCCTTCGCA
NONE
OsAffx.27810.1.S1_x_at--907--22547Chr12:11843328..11843352 (25 bp)
AAATCGTGACAATACCCTTCGCACA
NONE
OsAffx.27810.1.S1_x_at--1026--4945Chr12:11843330..11843354 (25 bp)
ATCGTGACAATACCCTTCGCACAAC
NONE
OsAffx.27810.1.S1_x_at--4--171266Chr12:4275419..4275443 (25 bp)
ACCACAGTGCACCATTCCTGGATCA
NONE
OsAffx.27810.1.S1_x_at--425--9671Chr01:19668977..19669001 (25 bp)
TCACCCCGTCAAAAACCAGAGGCAT
NONE
OsAffx.27810.1.S1_x_at--125--40119Chr09:1560337..1560469 (25 bp)
CGTCAAAAACCAGAGGCATGGACTC
NONE
OsAffx.27810.1.S1_x_at--298--2052Chr01:19669025..19669049 (25 bp)
ACTTCTTGCCGCTTCTCAGTCTAGC
NONE
OsAffx.27810.1.S1_x_at--1120--10553Chr01:19669027..19669051 (25 bp)
TTCTTGCCGCTTCTCAGTCTAGCAC
NONE
Target Sequence 
GAAGTACCACCACGGCACTGCAAAGGGGAAAATCGTGACAATACCCTTCGCACAACACAACTCACCACAGTGCACCATTC
CTGGATCATAATCACCCCGTCAAAAACCAGAGGCATGGACTCCCCAGCGACCCCCACGGACTTCTTGCCGCTTCTCAGTC
TAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27810.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis