Browse Element(s) Details


Os.6031.1.S1_at

Description gb:AK073570.1
DB_XREF= gi:32983593
TID=Os.6031.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence.
FL= gb:AK073570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3671910/11Lipoxygenase 3, putative, expressed
LOC_Os08g171301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36670OsAffx.19198.1.S1_at11/1111+21147686..21149007hypothetical protein
LOC_Os11g36670OsAffx.19197.1.S1_at2/1111+21147686..21149007hypothetical protein
LOC_Os11g36690OsAffx.31329.1.S1_at11/1111+21164045..21165849hypothetical protein
LOC_Os11g36700NANA11+21170341..21171655glycosyltransferase, putative
LOC_Os11g36719Os.6031.1.S1_at10/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_x_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719Os.52574.2.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.20020.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.5809.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36740OsAffx.31331.1.S1_at10/1111+21186130..21189758expressed protein
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6031.1.S1_at--353--8111Chr11:21182915..21182939 (25 bp)
GGACGTCCGACCTGGATGCCATGAA
LOC_Os11g36719
Os.6031.1.S1_at--836--1791Chr11:21182948..21182972 (25 bp)
ACCGCTTCCGTGAACGGCTCTTGGA
LOC_Os11g36719
Os.6031.1.S1_at--301--5491Chr11:21182982..21183006 (25 bp)
GAACATCGTGGCCAAGAACGACAAG
LOC_Os11g36719
Os.6031.1.S1_at--172--2751Chr11:21183019..21183043 (25 bp)
AAGAACAGGACAGGGCCGGTCAACA
LOC_Os11g36719
Os.6031.1.S1_at--564--9711Chr11:21183038..21183062 (25 bp)
TCAACATCCCCTACAATTTGCTCTT
LOC_Os11g36719
Os.6031.1.S1_at--937--1631Chr11:21183124..21183148 (25 bp)
AGCGCTTCCATCTGATCAAGCACTA
LOC_Os11g36719
Os.6031.1.S1_at--151--7631Chr11:21183173..21183197 (25 bp)
GGGACACATACTCCTTAATTAGCAA
LOC_Os11g36719
Os.6031.1.S1_at--973--1471Chr11:21183193..21183217 (25 bp)
AGCAACATTTCTCTTCTCGTGTAAT
LOC_Os11g36719
Os.6031.1.S1_at--27--7751Chr11:21183353..21183377 (25 bp)
GGTGTAACCGAAATGTAACTTGTCT
LOC_Os11g36719
Os.6031.1.S1_at--713--6453Chr11:21183391..21183415 (25 bp)
GATCAAGTGGCTAGCATGCATGGTT
LOC_Os11g36719
Os.6031.1.S1_at--69--7651Chr11:21183419..21183443 (25 bp)
GGGAGCGAGGTCTAGCAAATCTGAA
NONE
Target Sequence 
GGACGTCCGACCTGGATGCCATGAACGCGTTCGACCGCTTCCGTGAACGGCTCTTGGAGGTGGAGAAGAACATCGTGGCC
AAGAACGACAAGGGCAGTGGATTCAAGAACAGGACAGGGCCGGTCAACATCCCCTACAATTTGCTCTTCCCTTATGCCTC
CGGCGACGCGGAGGCCAACACCGGGGTCACCGGCAAGGGCATCCCCAACAGCGCTTCCATCTGATCAAGCACTATACTAT
ACAACAAGGGCAAGCAAGGGGACACATACTCCTTAATTAGCAACATTTCTCTTCTCGTGTAATGTGATAATTCAGTATGG
GTCATAAGTTTGTTTATGCAATAAATTAAAATAAAATCGGACTACCTATAAAACTGTCAAAAGAAAATTTCTCTAAAATA
TTTCAAATGTAATTATAGTGTAACTATATTATAATTCAGGTGTAACCGAAATGTAACTTGTCTAATCTTATAGAAAGATC
AAGTGGCTAGCATGCATGGTTTGCGGGAGCGAGGTCTAGCAAATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis