Browse Element(s) Details


OsAffx.31331.1.S1_at

Description tigr:9639.m03318
TID=OsAffx.31331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3674010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36690OsAffx.31329.1.S1_at11/1111+21164045..21165849hypothetical protein
LOC_Os11g36700NANA11+21170341..21171655glycosyltransferase, putative
LOC_Os11g36719Os.6031.1.S1_at10/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_x_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719Os.52574.2.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.20020.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.5809.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36740OsAffx.31331.1.S1_at10/1111+21186130..21189758expressed protein
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein
LOC_Os11g36770OsAffx.31332.1.S1_at11/1111+21210112..21210467hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31331.1.S1_at--676--7531Chr11:21187041..21187065 (25 bp)
GTGGCTGAGCCTGAAAATCCTTGCT
LOC_Os11g36740
OsAffx.31331.1.S1_at--875--3031Chr11:21187056..21187080 (25 bp)
AATCCTTGCTACTTTGGAACACCAA
LOC_Os11g36740
OsAffx.31331.1.S1_at--811--9011Chr11:21187151..21187175 (25 bp)
TGCAAGACTGCAGGCTCTGGAGGCA
LOC_Os11g36740
OsAffx.31331.1.S1_at--401--6351Chr11:21187187..21187211 (25 bp)
GATGCGGCATGCCATCATGTCGATG
LOC_Os11g36740
OsAffx.31331.1.S1_at--844--6631Chr11:21187230..21187254 (25 bp)
GTTGTACTGCTCAAGGAAATCGCGC
LOC_Os11g36740
OsAffx.31331.1.S1_at--1050--2891Chr11:21187266..21187290 (25 bp)
AAGGAGGCAGCACCATTGCAAGTAA
LOC_Os11g36740
OsAffx.31331.1.S1_at--201--91Chr11:21187290..21187314 (25 bp)
ATTCCATTTAAGGTGCGGTCGCCAC
LOC_Os11g36740
OsAffx.31331.1.S1_at--1067--6131Chr11:21187352..21187376 (25 bp)
GAGGCAGAGTTTCTTTGCGAAATTC
LOC_Os11g36740
OsAffx.31331.1.S1_at--140--2251Chr11:21187371..21187395 (25 bp)
AAATTCTTTGTCGTCGCGGTGATTA
LOC_Os11g36740
OsAffx.31331.1.S1_at--44--291Chr11:21187804..21187828 (25 bp)
ATAGGTGCCCAAATATCATATCGGA
LOC_Os11g36740
OsAffx.31331.1.S1_at--683--251NONE
ATATCGGAACTCTATGCTGGCGGAG
NONE
Target Sequence 
GTGGCTGAGCCTGAAAATCCTTGCTACTTTGGAACACCAATTGGTGGCGAAATGAGCCACAGGGGTACGATTGGTACTCG
GGCTGAGGAGGAGGAAATACAGAAGCTCAGTGCAAGACTGCAGGCTCTGGAGGCAGACCGGGAGTCGATGCGGCATGCCA
TCATGTCGATGGGATCTGAGAAGCAGCAGGTTGTACTGCTCAAGGAAATCGCGCAGAAGCTCTGCAAGGAGGCAGCACCA
TTGCAAGTAATTCCATTTAAGGTGCGGTCGCCACCACAACCAGTGGTTATGGCACAGAGGAAGGTGGTGAAGAGGCAGAG
TTTCTTTGCGAAATTCTTTGTCGTCGCGGTGATTAAGATCATTGCATATTTTATTTTCATTCTGATAATAATTGTGATAG
GTGCCCAAATATCATATCGGAACTCTATGCTGGCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis