Browse Element(s) Details


OsAffx.31332.1.S1_at

Description tigr:9639.m03321
TID=OsAffx.31332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3677011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36740OsAffx.31331.1.S1_at10/1111+21186130..21189758expressed protein
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein
LOC_Os11g36770OsAffx.31332.1.S1_at11/1111+21210112..21210467hypothetical protein
LOC_Os11g36780OsAffx.19200.1.S1_at9/1111+21215525..21217131hypothetical protein
LOC_Os11g36790OsAffx.15787.2.S1_s_at11/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790Os.20602.2.S1_x_at8/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790OsAffx.15787.1.S1_at1/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36800OsAffx.19201.1.S1_at11/1111+21225853..21226323hypothetical protein
LOC_Os11g36800OsAffx.15332.1.S1_s_at2/1111+21225853..21226323hypothetical protein
LOC_Os11g36810OsAffx.7317.1.S1_s_at10/1111+21226929..21227892hypothetical protein
LOC_Os11g36820OsAffx.31333.1.S1_at11/1111+21228640..21229266hypothetical protein
LOC_Os11g36830Os.53491.1.S1_at11/1111+21229554..21231664expressed protein
LOC_Os11g36840OsAffx.31334.1.S1_at11/1111+21232860..21234826expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31332.1.S1_at--998--10191Chr11:21210145..21210169 (25 bp)
TATATTCTTGTGCTCACATCATGTG
LOC_Os11g36770
OsAffx.31332.1.S1_at--1005--2071Chr11:21210160..21210184 (25 bp)
ACATCATGTGGTAAGTCGACGGGCA
LOC_Os11g36770
OsAffx.31332.1.S1_at--887--2831Chr11:21210172..21210196 (25 bp)
AAGTCGACGGGCAAAGCTAAATGTG
LOC_Os11g36770
OsAffx.31332.1.S1_at--191--2351Chr11:21210184..21210208 (25 bp)
AAAGCTAAATGTGCCATCGCCACCG
LOC_Os11g36770
OsAffx.31332.1.S1_at--137--9851Chr11:21210189..21210213 (25 bp)
TAAATGTGCCATCGCCACCGTGGAA
LOC_Os11g36770
OsAffx.31332.1.S1_at--241--531Chr11:21210199..21210223 (25 bp)
ATCGCCACCGTGGAATTTTTGTCCA
LOC_Os11g36770
OsAffx.31332.1.S1_at--886--4391Chr11:21210202..21210226 (25 bp)
GCCACCGTGGAATTTTTGTCCAATT
LOC_Os11g36770
OsAffx.31332.1.S1_at--846--171Chr11:21210213..21210237 (25 bp)
ATTTTTGTCCAATTTATCTGATCTG
LOC_Os11g36770
OsAffx.31332.1.S1_at--588--7251Chr11:21210219..21210243 (25 bp)
GTCCAATTTATCTGATCTGGAATTT
LOC_Os11g36770
OsAffx.31332.1.S1_at--393--10191Chr11:21210262..21210408 (25 bp)
TTAAAGGACTTGGTACTGACAGTAG
LOC_Os11g36770
OsAffx.31332.1.S1_at--138--7851Chr11:21210273..21210419 (25 bp)
GGTACTGACAGTAGACACTGAAGCA
LOC_Os11g36770
Target Sequence 
TATATTCTTGTGCTCACATCATGTGGTAAGTCGACGGGCAAAGCTAAATGTGCCATCGCCACCGTGGAATTTTTGTCCAA
TTTATCTGATCTGGAATTTTTGTTCATGGTGTATAAATTAAAGGACTTGGTACTGACAGTAGACACTGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis