Browse Element(s) Details


OsAffx.15332.1.S1_s_at

Description tigr:9634.m00877
TID=OsAffx.15332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0926011/11expressed protein
LOC_Os11g368002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15332.1.S1_s_at--282--5091Chr06:4650194..4650218 (25 bp)
GCACGGGCACCGTGCCATATGCCGA
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--610--9291Chr06:4650265..4650289 (25 bp)
TCCGTCACGTGTGCGCTCGACGAGT
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--525--6251Chr06:4650336..4650360 (25 bp)
GATGGTCTGGAGGATTGTTGCACAC
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--295--7192Chr11:21226166..21226185 (20 bp)
GTCTGGAGGATTGTTGCACACCACA
LOC_Os11g36800
OsAffx.15332.1.S1_s_at--181--8033Chr11:21226166..21226189 (24 bp)
GGAGGATTGTTGCACACCACATGTT
LOC_Os11g36800
OsAffx.15332.1.S1_s_at--499--1012Chr06:4650346..4650370 (25 bp)
AGGATTGTTGCACACCACATGTTAT
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--13--6611Chr06:4650348..4650372 (25 bp)
GATTGTTGCACACCACATGTTATTT
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--935--6651Chr06:4650352..4650376 (25 bp)
GTTGCACACCACATGTTATTTTGTT
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--626--9011Chr06:4650354..4650378 (25 bp)
TGCACACCACATGTTATTTTGTTGC
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--656--1111Chr06:4650381..4650405 (25 bp)
AGTGTTCTTGTGATGTTGCAATCTG
LOC_Os06g09260
OsAffx.15332.1.S1_s_at--540--8792Chr07:20786422..20786469 (25 bp)
TGTTCTTGTGATGTTGCAATCTGTC
NONE
Target Sequence 
GCACGGGCACCGTGCCATATGCCGAGTTCCTCCGGCTCTGCTGTGACGCCTCCGGCGCGGAGTCCGGCGCCTCCGTCACG
TGTGCGCTCGACGAGTCCGGATCCGTCATCGTGCTCGGCAAGACCGTCTTCCTCAGGCCCGAGATGGTCTGGAGGATTGT
TGCACACCACATGTTATTTTGTTGCACAGTGTTCTTGTGATGTTGCAATCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15332.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis