Browse Element(s) Details


Os.55786.1.S1_at

Description gb:AK108798.1
DB_XREF= gi:32994007
TID=Os.55786.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C05, full insert sequence.
FL= gb:AK108798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0927011/11hypro1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55786.1.S1_at--287--951Chr06:4653913..4653937 (25 bp)
AGGACATGTACTACGGCGCCGGGCT
LOC_Os06g09270
Os.55786.1.S1_at--477--3531Chr06:4653858..4653882 (25 bp)
CATGCTCGGCATGGGCTACGTGCTG
LOC_Os06g09270
Os.55786.1.S1_at--84--8691Chr06:4653835..4653859 (25 bp)
TGTCCTGGGATCTCGTCGAGTGGAT
LOC_Os06g09270
Os.55786.1.S1_at--801--4391Chr06:4653798..4653818 (21 bp)
GCCAAAGCGCTAGCCATAGGTGCAG
LOC_Os06g09270
Os.55786.1.S1_at--457--10391Chr06:4652720..4652744 (25 bp)
TTTTCCCTAGGATGTATGACTTCAA
LOC_Os06g09270
Os.55786.1.S1_at--703--5691Chr06:4652679..4652703 (25 bp)
GACTTCTTGGAGGACACTATTGGTG
LOC_Os06g09270
Os.55786.1.S1_at--741--6251Chr06:4652630..4652654 (25 bp)
GATGGGCACAAACCTTGGAGCACTT
LOC_Os06g09270
Os.55786.1.S1_at--73--8551Chr06:4652615..4652639 (25 bp)
TGGAGCACTTCAATGTCACCTGCCT
LOC_Os06g09270
Os.55786.1.S1_at--104--10791Chr06:4652591..4652615 (25 bp)
TTGATCCCTCCAGCAAGATGACCAA
LOC_Os06g09270
Os.55786.1.S1_at--435--9911Chr06:4652549..4652573 (25 bp)
TACTGGCAGCCATCTAGTTAGCTCT
LOC_Os06g09270
Os.55786.1.S1_at--1141--6771Chr06:4652533..4652557 (25 bp)
GTTAGCTCTTCTAGAATCATCCGTG
LOC_Os06g09270
Target Sequence 
AGGACATGTACTACGGCGCCGGGCTGCCGTTCCTCGACAAGGAGTCGCCGCCGTTCATGCTCGGCATGGGCTACGTGCTG
TCCTGGGATCTCGTCGAGTGGATCGCCGGCTCCGACATGGCCAAAGCGCTAGCCATAGGTGCAGAAGATGTGACAACAGG
GACATGGCTGAACATGGGCAACAAGGCCAAGAATAGGGTGAACATTTTCCCTAGGATGTATGACTTCAAGGGTGTCAAGC
CAGAGGACTTCTTGGAGGACACTATTGGTGTGCACCAGCTAAAGCAAGACCTGAGATGGGCACAAACCTTGGAGCACTTC
AATGTCACCTGCCTTGATCCCTCCAGCAAGATGACCAACTCACTACTCTCCTAGCTACTGGCAGCCATCTAGTTAGCTCT
TCTAGAATCATCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis