Browse Element(s) Details


OsAffx.12199.1.A1_at

Description tigr:9630.m02461
TID=OsAffx.12199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F22O13.28
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g355001/11expressed protein
LOC_Os06g092701/11hypro1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12199.1.A1_at--24--2431Chr02:15362426..15362450 (25 bp)
AAAACTGAGGGCTCGATGACGCGCC
NONE
OsAffx.12199.1.A1_at--951--1071Chr02:15362433..15362457 (25 bp)
AGGGCTCGATGACGCGCCGGAGATC
NONE
OsAffx.12199.1.A1_at--33--4272Chr02:15362449..15362473 (25 bp)
CCGGAGATCAGCGTGGACGACGACA
NONE
OsAffx.12199.1.A1_at--154--6131Chr02:15362553..15362577 (25 bp)
GAGGGTGTCGCAGAGGCCGGCGCCT
NONE
OsAffx.12199.1.A1_at--654--8391Chr02:15362571..15362595 (25 bp)
GGCGCCTCCTTTCTCCTTGTCGAAA
NONE
OsAffx.12199.1.A1_at--79--9491Chr02:15362582..15362606 (25 bp)
TCTCCTTGTCGAAACCGAACCCGAG
NONE
OsAffx.12199.1.A1_at--1020--5352Chr10:18665075..18665112 (24 bp)
GAAACCGAACCCGAGCTCGAAGGAG
LOC_Os10g35500
OsAffx.12199.1.A1_at--978--9351Chr02:15362608..15362632 (25 bp)
TCGAAGGAGCCCCTCAGCTCGTCGA
NONE
OsAffx.12199.1.A1_at--422--1591Chr02:15362623..15362647 (25 bp)
AGCTCGTCGAGGTCTGCGTCGGTCA
NONE
OsAffx.12199.1.A1_at--61--9391Chr02:15362629..15362653 (25 bp)
TCGAGGTCTGCGTCGGTCAGGCACC
NONE
OsAffx.12199.1.A1_at--89--9131Chr02:15362669..15362693 (25 bp)
TGCTGGTCGCGGCTGCCTCGTTCAC
NONE
Target Sequence 
AAAACTGAGGGCTCGATGACGCGCCGGAGATCAGCGTGGACGACGACAGCGTCGACGTGGGGCTCCGCAGCTTGGAGCCG
TCGGAGAGGCGCTGCCGGTTGACGGTGAAGTAGAGGTCGAGGGCCGGGAGGGTGTCGCAGAGGCCGGCGCCTCCTTTCTC
CTTGTCGAAACCGAACCCGAGCTCGAAGGAGCCCCTCAGCTCGTCGAGGTCTGCGTCGGTCAGGCACCGCCCAAAGCCTT
CTCTGCTGGTCGCGGCTGCCTCGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12199.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis