Browse Element(s) Details

Os.46897.1.S1_a_at

Description

gb:AK103003.1
DB_XREF= gi:32988212
TID=Os.46897.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinase (OSJNBa0017E08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116G17, full insert sequence.
FL= gb:AK073182.1 gb:AK103003.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g35450	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g35436	Os.46550.1.A1_at	11/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.47809.1.S1_s_at	11/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.47809.1.S1_a_at	11/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46550.2.S1_x_at	9/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46550.2.S1_at	6/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46127.1.S1_x_at	5/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46382.2.S1_x_at	4/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.53725.1.S1_x_at	1/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.17135.1.S1_at	1/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450	Os.46897.1.S1_a_at	11/11	10	+	18640884..18645624	Protein kinase domain containing protein, expressed
LOC_Os10g35460	Os.15633.1.S2_at	11/11	10	+	18646403..18649458	COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460	Os.15633.1.S1_at	11/11	10	+	18646403..18649458	COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470	Os.15848.1.A1_a_at	11/11	10	+	18651758..18655606	prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480	Os.19949.1.S1_s_at	11/11	10	+	18657099..18659375	Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480	Os.46469.1.S1_at	11/11	10	+	18657099..18659375	Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490	Os.46397.1.S1_x_at	11/11	10	+	18659706..18661510	epoxide hydrolase, putative, expressed
LOC_Os10g35500	Os.48028.1.S1_x_at	11/11	10	+	18664962..18667187	expressed protein
LOC_Os10g35500	Os.53171.1.S1_at	11/11	10	+	18664962..18667187	expressed protein
LOC_Os10g35500	OsAffx.12199.1.A1_at	1/11	10	+	18664962..18667187	expressed protein
LOC_Os10g35510	Os.47130.4.A1_x_at	3/11	10	+	18668119..18668442	retrotransposon protein, putative, unclassified
LOC_Os10g35520	Os.23214.1.S1_at	11/11	10	+	18669203..18671431	epoxide hydrolase, putative, expressed
LOC_Os10g35520	Os.46591.1.S1_x_at	1/11	10	+	18669203..18671431	epoxide hydrolase, putative, expressed
LOC_Os10g35520	Os.46591.2.S1_x_at	1/11	10	+	18669203..18671431	epoxide hydrolase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46897.1.S1_a_at--683--949	1	Chr10:18644940..18644964 (25 bp)	TCTCCTAGTGGCACTGAGGTGCGTC	LOC_Os10g35450
Os.46897.1.S1_a_at--1157--777	1	Chr10:18644957..18644981 (25 bp)	GGTGCGTCGACCCAGACTCTGAGAA	LOC_Os10g35450
Os.46897.1.S1_a_at--851--429	1	Chr10:18644986..18645010 (25 bp)	CCTACTATGGGTCATGTTGTTCGGA	LOC_Os10g35450
Os.46897.1.S1_a_at--497--73	1	Chr10:18644999..18645023 (25 bp)	ATGTTGTTCGGATGCTCGAGGCAGA	LOC_Os10g35450
Os.46897.1.S1_a_at--681--93	1	Chr10:18645017..18645041 (25 bp)	AGGCAGAAGATGTCCCATCCCGTGA	LOC_Os10g35450
Os.46897.1.S1_a_at--722--381	1	Chr10:18645157..18645181 (25 bp)	CTGCCAATGCAGATACCGAGTCCAA	LOC_Os10g35450
Os.46897.1.S1_a_at--711--123	1	Chr10:18645167..18645191 (25 bp)	AGATACCGAGTCCAAGACAAGCTCA	LOC_Os10g35450
Os.46897.1.S1_a_at--897--141	1	Chr10:18645181..18645205 (25 bp)	AGACAAGCTCAAGCGAATTCGAGAT	LOC_Os10g35450
Os.46897.1.S1_a_at--303--147	1	Chr10:18645216..18645240 (25 bp)	AGAAGGGACTCAGGGCCATCAGCAA	LOC_Os10g35450
Os.46897.1.S1_a_at--217--621	1	Chr10:18645519..18645543 (25 bp)	GAGGCTCTTGGATTACCAGTACGAA	LOC_Os10g35450
Os.46897.1.S1_a_at--907--117	1	Chr10:18645536..18645560 (25 bp)	AGTACGAACCGCTGTCTCTTTTCTA	LOC_Os10g35450

Target Sequence

TCTCCTAGTGGCACTGAGGTGCGTCGACCCAGACTCTGAGAAAAGACCTACTATGGGTCATGTTGTTCGGATGCTCGAGG
CAGAAGATGTCCCATCCCGTGAGGACCGGAGGAGCCGGAGGGGCAACACTGCCAATGCAGATACCGAGTCCAAGACAAGC
TCAAGCGAATTCGAGATAAGTGGCGATAGAAGGGACTCAGGGCCATCAGCAAGGTTTCAACNCTAAGAAGACGGTGATCA
TAGTCAAGAACAATGGCTTCAAAACTCTATGCAGTAACATGGTGGTTGGCAGAGAAAAAGGGGTATTTCTGGAGGGCATT
GCATTTTGTATTGTAGGTCTGCATGGCGGTAGAGACTGGAGAGAGCACAGTGTCTGATGATGGATACCCGGAGACCTGTA
ATTCCCATTCAGTATTCTGTTTGNTAGTCAAGCAGCTTGTACAGATCGTTGTCTGTTCCATTTTTTCATTCTTCTGGTTT
TTTTGTTTAGGAGGCTCTTGGATTACCAGTACGAACCGCTGTCTCTTTTCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis