Browse Element(s) Details

Os.19949.1.S1_s_at

Description

gb:AU033053
DB_XREF= gi:3769026
DB_XREF=AU033053
CLONE=S1781_1Z
TID=Os.19949.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19949 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g35480	11/11	Lanthionine synthetase C-like protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g35450	Os.46897.1.S1_a_at	11/11	10	+	18640884..18645624	Protein kinase domain containing protein, expressed
LOC_Os10g35460	Os.15633.1.S2_at	11/11	10	+	18646403..18649458	COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460	Os.15633.1.S1_at	11/11	10	+	18646403..18649458	COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470	Os.15848.1.A1_a_at	11/11	10	+	18651758..18655606	prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480	Os.19949.1.S1_s_at	11/11	10	+	18657099..18659375	Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480	Os.46469.1.S1_at	11/11	10	+	18657099..18659375	Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490	Os.46397.1.S1_x_at	11/11	10	+	18659706..18661510	epoxide hydrolase, putative, expressed
LOC_Os10g35500	Os.48028.1.S1_x_at	11/11	10	+	18664962..18667187	expressed protein
LOC_Os10g35500	Os.53171.1.S1_at	11/11	10	+	18664962..18667187	expressed protein
LOC_Os10g35500	OsAffx.12199.1.A1_at	1/11	10	+	18664962..18667187	expressed protein
LOC_Os10g35510	Os.47130.4.A1_x_at	3/11	10	+	18668119..18668442	retrotransposon protein, putative, unclassified
LOC_Os10g35520	Os.23214.1.S1_at	11/11	10	+	18669203..18671431	epoxide hydrolase, putative, expressed
LOC_Os10g35520	Os.46591.1.S1_x_at	1/11	10	+	18669203..18671431	epoxide hydrolase, putative, expressed
LOC_Os10g35520	Os.46591.2.S1_x_at	1/11	10	+	18669203..18671431	epoxide hydrolase, putative, expressed
LOC_Os10g35530	Os.46591.2.S1_x_at	10/11	10	+	18672608..18674568	epoxide hydrolase, putative, expressed
LOC_Os10g35530	Os.46591.1.S1_x_at	10/11	10	+	18672608..18674568	epoxide hydrolase, putative, expressed
LOC_Os10g35530	Os.46591.1.S1_at	9/11	10	+	18672608..18674568	epoxide hydrolase, putative, expressed
LOC_Os10g35540	Os.46650.1.S1_at	11/11	10	+	18676322..18678143	hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550	Os.21457.1.S1_at	11/11	10	+	18680095..18684612	U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550	Os.10271.2.S1_x_at	4/11	10	+	18680095..18684612	U5 snRNP-associated 102 kDa protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.19949.1.S1_s_at--1009--963	1	Chr10:18659086..18659110 (25 bp)	TCAGAATCAAAGTTCCCGGCCTATG	LOC_Os10g35480
Os.19949.1.S1_s_at--845--341	1	Chr10:18659087..18659111 (25 bp)	CAGAATCAAAGTTCCCGGCCTATGA	LOC_Os10g35480
Os.19949.1.S1_s_at--66--743	1	Chr10:18659191..18659215 (25 bp)	GTGTTTTCTTGCGTACCCAGTAATG	LOC_Os10g35480
Os.19949.1.S1_s_at--1052--1055	1	Chr10:18659196..18659220 (25 bp)	TTCTTGCGTACCCAGTAATGTGTGC	LOC_Os10g35480
Os.19949.1.S1_s_at--445--1071	1	Chr10:18659199..18659223 (25 bp)	TTGCGTACCCAGTAATGTGTGCATT	LOC_Os10g35480
Os.19949.1.S1_s_at--268--699	1	Chr10:18659203..18659227 (25 bp)	GTACCCAGTAATGTGTGCATTGTAA	LOC_Os10g35480
Os.19949.1.S1_s_at--519--715	1	Chr10:18659234..18659258 (25 bp)	GTCTTTGTAAAGTTCAGTATCCAGA	LOC_Os10g35480
Os.19949.1.S1_s_at--613--233	1	Chr10:18659242..18659266 (25 bp)	AAAGTTCAGTATCCAGATGGTGCAA	LOC_Os10g35480
Os.19949.1.S1_s_at--721--613	1	Chr10:18659294..18659318 (25 bp)	GAGGGAGTTCCTTGAAATATGATAA	LOC_Os10g35480
Os.19949.1.S1_s_at--801--23	1	Chr10:18659318..18659342 (25 bp)	ATATTTATGTTGGTTGTTGCCTCTA	LOC_Os10g35480
Os.19949.1.S1_s_at--1072--1011	1	Chr10:18659323..18659347 (25 bp)	TATGTTGGTTGTTGCCTCTATTTGT	LOC_Os10g35480

Target Sequence

TCAGAATCAAAGTTCCCGGCCTATGANCTTTGAAGGGCNTCATAAATATATGTANCCTGTTAGGANCAAATGCTCAGTGA
NCCANCCANCCAAAGTANCTGTATTGTGTTTTCTTGCGTACCCAGTAATGTGTGCATTGTAANTTGTTGTCTTTGTAAAG
TTCAGTATCCAGATGGTGCAANCTTGAACCTTTGTAAAANACATGTTTGAGGGAGTTCCTTGAAATATGATAATATTTAT
GTTGGTTGTTGCCTCTATTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis