Browse Element(s) Details


Os.21457.1.S1_at

Description gb:AK071378.1
DB_XREF= gi:32981401
TID=Os.21457.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pre-mRNA splicing factor (OSJNBa0017E08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091C22, full insert sequence.
FL= gb:AK071378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3555011/11U5 snRNP-associated 102 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006445biological_processregulation of translation
GO:0009657biological_processplastid organization and biogenesis
GO:0005622cellular_componentintracellular
GO:0009941cellular_componentchloroplast envelope
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21457.1.S1_at--1103--2271Chr10:18681487..18681511 (25 bp)
AAATGCTGCAGATCCCTAGTTTGTC
LOC_Os10g35550
Os.21457.1.S1_at--1142--7171Chr10:18680523..18680547 (25 bp)
GTCTGGTCACAGGTCTAATTCTTCT
LOC_Os10g35550
Os.21457.1.S1_at--524--3151Chr10:18680507..18680531 (25 bp)
AATTCTTCTGCGCATGCTGGCAATG
LOC_Os10g35550
Os.21457.1.S1_at--985--2011Chr10:18680339..18680363 (25 bp)
ACTACAATTTGTATCGGCGATCACC
LOC_Os10g35550
Os.21457.1.S1_at--439--5191Chr10:18680277..18680301 (25 bp)
GCAATACTTCTGTACTACCATGAGC
LOC_Os10g35550
Os.21457.1.S1_at--846--691Chr10:18680258..18680282 (25 bp)
ATGAGCATGTTTATTCCTCCAGATG
LOC_Os10g35550
Os.21457.1.S1_at--126--10671Chr10:18680245..18680269 (25 bp)
TTCCTCCAGATGCATACCACAAATT
LOC_Os10g35550
Os.21457.1.S1_at--935--10711Chr10:18680205..18680229 (25 bp)
TTGCTAGCCGCGACTTGGGATGATG
LOC_Os10g35550
Os.21457.1.S1_at--814--7671Chr10:18680169..18680193 (25 bp)
GGGTTCGGTTTATTCTCAGAGCACT
LOC_Os10g35550
Os.21457.1.S1_at--133--1371Chr10:18680152..18680176 (25 bp)
AGAGCACTGGCGTCTGTATCTACGA
LOC_Os10g35550
Os.21457.1.S1_at--479--6411Chr10:18680121..18680145 (25 bp)
GATCTGCCTGAATGTCGGCTTAATA
LOC_Os10g35550
Target Sequence 
AAATGCTGCAGATCCCTAGTTTGTCTCACTTTTAACTTTTGATAAGTCTGGTCACAGGTCTAATTCTTCTGCGCATGCTG
GCAATGGAATATATNGAGAAAGAAACACAGTTGGGTAGTGAACTGGGATGGACTCGAGCTGCGACCTCGTGNATTCTGNT
GTACCACCGNAACTGNATTNGCTNGCACTCCTNCCNAACCATGAAGCCTTACCTGAAGNNAGAATCNAGGCNATGCGATT
ACTACAATTTGTATCGGCGATCACCAGTTNAAACCTGTATCGTTTGNATGCCCTAATTGCCAGCAATACTTCTGTACTAC
CATGAGCATGTTTATTCCTCCAGATGCATACCACAAATTCTTAGATNGGTGTATTTGCTAGCCGCGACTTGGGATGATGT
AATTTTTCTTGGGTTCGGTTTATTCTCAGAGCACTGGCGTCTGTATCTACGACTGTANGATCTGCCTGAATGTCGGCTTA
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis