Browse Element(s) Details


Os.20562.1.S1_a_at

Description gb:AK101061.1
DB_XREF= gi:32986270
TID=Os.20562.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.20562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycine-rich protein (OSJNBa0078O01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022G24, full insert sequence.
FL= gb:AK101061.1 gb:AK102105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3556011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20562.1.S1_a_at--957--9531Chr10:18695068..18695092 (25 bp)
TCTAGGTGTGATGGGTTCTCGGAGA
LOC_Os10g35560
Os.20562.1.S1_a_at--506--10591Chr10:18695083..18695107 (25 bp)
TTCTCGGAGAGATGTTATTACAGCT
LOC_Os10g35560
Os.20562.1.S1_a_at--500--2111Chr10:18695117..18695141 (25 bp)
ACAGGCCTCGAAGGTGAATGGTACA
LOC_Os10g35560
Os.20562.1.S1_a_at--996--5271Chr10:18695132..18695272 (25 bp)
GAATGGTACAAGTGCATACGATGTT
LOC_Os10g35560
Os.20562.1.S1_a_at--675--7331Chr10:18695259..18695283 (25 bp)
GTGCATACGATGTTTGAGGCAAACC
LOC_Os10g35560
Os.20562.1.S1_a_at--681--8771Chr10:18695269..18695293 (25 bp)
TGTTTGAGGCAAACCTGTGCATTTG
LOC_Os10g35560
Os.20562.1.S1_a_at--353--3291Chr10:18695278..18695302 (25 bp)
CAAACCTGTGCATTTGCTCAGCCTG
LOC_Os10g35560
Os.20562.1.S1_a_at--945--9652Chr10:18695295..18695319 (25 bp)
TCAGCCTGGTGCTCTAGCTCCGAAC
LOC_Os10g35560
Os.20562.1.S1_a_at--604--9471Chr10:18695307..18695331 (25 bp)
TCTAGCTCCGAACACGTCGAATGAG
LOC_Os10g35560
Os.20562.1.S1_a_at--581--2471Chr10:18695317..18695341 (25 bp)
AACACGTCGAATGAGCTTGAGGCAT
LOC_Os10g35560
Os.20562.1.S1_a_at--257--3631Chr10:18695332..18695356 (25 bp)
CTTGAGGCATGGTGGATCAGCCGAT
LOC_Os10g35560
Target Sequence 
TCTAGGTGTGATGGGTTCTCGGAGAGATGTTATTACAGCTGTGTGGAAAACAGGCCTCGAAGGTGAATGGTACAAGTGCA
TACGATGTTTGAGGCAAACCTGTGCATTTGCTCAGCCTGGTGCTCTAGCTCCGAACACGTCGAATGAGCTTGAGGCATGG
TGGATCAGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20562.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis