Browse Element(s) Details


Os.6427.1.S1_at

Description gb:AK108732.1
DB_XREF= gi:32993941
TID=Os.6427.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative microtubule-associated protein (OSJNBa0078O01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D04, full insert sequence.
FL= gb:AK108732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3558011/11microtubule-associated EB1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030865biological_processcortical cytoskeleton organization and biogenesis
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005815cellular_componentmicrotubule organizing center
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6427.1.S1_at--1014--8531Chr10:18705177..18705201 (25 bp)
TGGAGATCTTGTGCCAGAGCCCTGA
LOC_Os10g35580
Os.6427.1.S1_at--945--1371Chr10:18705162..18705186 (25 bp)
AGAGCCCTGAAGTCGAGCATTTGCC
LOC_Os10g35580
Os.6427.1.S1_at--571--3831Chr10:18704762..18704786 (25 bp)
CTGCGGAGGATGACCCCTCGATGGT
LOC_Os10g35580
Os.6427.1.S1_at--286--7391Chr10:18704699..18704723 (25 bp)
GTGAGCAGCCGATGCTGAGCCCAAT
LOC_Os10g35580
Os.6427.1.S1_at--613--8911Chr10:18704684..18704708 (25 bp)
TGAGCCCAATCCTGGAGGCGTCGGA
LOC_Os10g35580
Os.6427.1.S1_at--124--1331Chr10:18704630..18704654 (25 bp)
AGAGGAAGAGCATCTCCGACCTGGA
LOC_Os10g35580
Os.6427.1.S1_at--208--991Chr10:18704600..18704624 (25 bp)
AGGAGTTCGGCATGGCGTCCAGCTC
LOC_Os10g35580
Os.6427.1.S1_at--253--1751Chr10:18704530..18704554 (25 bp)
ACCTCTGACGAGCTTCACTTGAATG
LOC_Os10g35580
Os.6427.1.S1_at--1128--8551Chr10:18704391..18704415 (25 bp)
TGGTTTTCCTTTGCGTTGTATTGTT
LOC_Os10g35580
Os.6427.1.S1_at--560--3671Chr10:18704383..18704407 (25 bp)
CTTTGCGTTGTATTGTTGGTGGTAT
LOC_Os10g35580
Os.6427.1.S1_at--839--8691Chr10:18704352..18704376 (25 bp)
TGTGCTATTTTCTTGCCTTCGGATG
LOC_Os10g35580
Target Sequence 
TGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGNNTNTCAACGCGATTCATAAGGTNNTCTACNCTGCGGAG
GATGACCCCTCGATGGTGNCGGAGGCGCAGNCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAAT
CCTGGAGGCGTCGGAGGAGAGGCCGGCGAAGCAGGAGGCGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGT
TCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTC
ACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGA
TTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTTCCTTTGCGTTGTATTGTTGGTGGTATAATG
TGTGTGCTATTTTCTTGCCTTCGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis