Browse Element(s) Details


Os.46397.1.S1_x_at

Description gb:AK071470.1
DB_XREF= gi:32981493
TID=Os.46397.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative epoxide hydrolase (OSJNBa0017E08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096B06, full insert sequence.
FL= gb:AK071470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3549011/11epoxide hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46397.1.S1_x_at--119--6331Chr10:18660378..18660402 (25 bp)
GATGAATCAACACCGATGCCTCAGT
LOC_Os10g35490
Os.46397.1.S1_x_at--976--7491Chr10:18660355..18660379 (25 bp)
GTGGTTCACCGAAGAAGACCTCTCA
LOC_Os10g35490
Os.46397.1.S1_x_at--664--9651Chr10:18660333..18660357 (25 bp)
TCAGCTTACACCGACCTGTATGAGA
LOC_Os10g35490
Os.46397.1.S1_x_at--436--7811Chr10:18660303..18660327 (25 bp)
GGTCTCATGACTGCTATCCAAATTC
LOC_Os10g35490
Os.46397.1.S1_x_at--1016--2751Chr10:18660071..18660095 (25 bp)
AAGACTACATCCTCAAGTTTCCAGC
LOC_Os10g35490
Os.46397.1.S1_x_at--763--71Chr10:18660009..18660033 (25 bp)
ATTGCTCCAGACTACGGGATCACTT
LOC_Os10g35490
Os.46397.1.S1_x_at--788--91Chr10:18659950..18659974 (25 bp)
ATTCCCTGACCTGGTGAATCAGCTT
LOC_Os10g35490
Os.46397.1.S1_x_at--5--411Chr10:18659933..18659957 (25 bp)
ATCAGCTTGTGATAGACTTCGTCAG
LOC_Os10g35490
Os.46397.1.S1_x_at--44--3191Chr10:18659874..18659898 (25 bp)
CAATTTGACAAATCCCCAGACTGCA
LOC_Os10g35490
Os.46397.1.S1_x_at--174--9151Chr10:18659830..18659854 (25 bp)
TGCGTTCACTGATGTGCACCACTAA
LOC_Os10g35490
Os.46397.1.S1_x_at--777--7051Chr10:18659793..18659817 (25 bp)
GTAACGTCGTGCTCATGATGGTATC
LOC_Os10g35490
Target Sequence 
GATGAATCAACACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGAAATCAGGTCT
CATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAGGTGCTAATCCAAGGTTTGAAATGCCAATGT
TTGTGATTATGGGTCAGAAAGACTACATCCTCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAA
ATTGCTCCAGACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGANCAATTCCCTGACCTGGTGAATCA
GCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACAAGGTGCAATTTGACAAATCCCCAGACTGCA
AAAGGTAACAGTTGAGCACTGCGTTCACTGATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46397.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis