Browse Element(s) Details


Os.46650.1.S1_at

Description gb:CR279516
DB_XREF= gi:44666082
DB_XREF=CR279516
CLONE=y782f11p3
TID=Os.46650.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative epoxide hydrolase (OSJNBa0017E08.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3554011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46650.1.S1_at--628--6011Chr10:18677493..18677517 (25 bp)
GAGAGTTGTGCGCACTATCTATATT
LOC_Os10g35540
Os.46650.1.S1_at--325--3331Chr10:18677505..18677529 (25 bp)
CACTATCTATATTCTCTTTTCTAAG
LOC_Os10g35540
Os.46650.1.S1_at--212--7091Chr10:18677583..18677607 (25 bp)
GTCAACACCCCTTCCTGAGTGGTTT
LOC_Os10g35540
Os.46650.1.S1_at--355--9611Chr10:18677632..18677656 (25 bp)
TCATCTCTCTATGAGAAATCCGGTT
LOC_Os10g35540
Os.46650.1.S1_at--1082--3031Chr10:18677648..18677672 (25 bp)
AATCCGGTTTTCGATATCCACTACA
LOC_Os10g35540
Os.46650.1.S1_at--694--271Chr10:18677770..18677793 (24 bp)
ATAGGTCTCTCCATAAGAGGAAACC
LOC_Os10g35540
Os.46650.1.S1_at--1161--8231Chr10:18677891..18677915 (25 bp)
GGCACTATGGAGAGGCATGCACCAG
LOC_Os10g35540
Os.46650.1.S1_at--45--1751Chr10:18677927..18677951 (25 bp)
ACCTATATCCCTGAAGGGAGCCATT
LOC_Os10g35540
Os.46650.1.S1_at--588--6791Chr10:18678031..18678055 (25 bp)
GTTATTGTAGACTCAATTGTGCTTC
LOC_Os10g35540
Os.46650.1.S1_at--110--9671Chr10:18678054..18678078 (25 bp)
TCACCCGTAGTACAAGTTGGCGATG
LOC_Os10g35540
Os.46650.1.S1_at--260--6611Chr10:18678069..18678093 (25 bp)
GTTGGCGATGGAAACATTGTGCTAT
LOC_Os10g35540
Target Sequence 
GAGAGTTGTGCGCACTATCTATATTCTCTTTTCTAAGAGCGAGATCCCCATGGCTAAGGAAGATCAAGAGATCATGGATC
TTGCAGACTTGTCAACACCCCTTCCTGAGTGGTTTACTGAGGAGGATCTTGATGTATACTCATCTCTCTATGAGAAATCC
GGTTTTCGATATCCACTACAGATGCCATATAGGTCTCTCCATAAGAGGAAACCAATNGGAGATGCAAAATTCCAAGTCCC
AGTGTTTGTTGTCATGGGGGAGAAAGATTATGTCTACAAGTTCCCTGGCGTCGAGTCTGCTATNAAAGACGGCACTATGG
AGAGGCATGCACCAGACATGAAGATNACCTATATCCCTGAAGGGAGCCATTTTGTGCAGGAGCAATTCCCTGACTATGTG
AATGAGCTCCTTCTTGCATTNCTTGAAAGATCATCCCGTGGATAAATAGATGTTATTGTAGACTCAATTGTGCTTCACCC
GTAGTACAAGTTGGCGATGGAAACATTGTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis