Browse Element(s) Details


Os.48028.1.S1_x_at

Description gb:C99392
DB_XREF= gi:3762144
DB_XREF=C99392
CLONE=E11046_1Z
TID=Os.48028.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative epoxide hydrolase (OSJNBa0017E08.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3550011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48028.1.S1_x_at--444--3971Chr10:18666657..18666681 (25 bp)
CGGTACATAGGAGGCCAAGCCGGAA
LOC_Os10g35500
Os.48028.1.S1_x_at--576--5291Chr10:18666724..18666748 (25 bp)
GAAGGACTACGCGTTCAAGTTCCCG
LOC_Os10g35500
Os.48028.1.S1_x_at--956--9331Chr10:18666789..18666813 (25 bp)
TCGCGCCGGAGCTGAAGATCGAGTT
LOC_Os10g35500
Os.48028.1.S1_x_at--659--8971Chr10:18666801..18666825 (25 bp)
TGAAGATCGAGTTCCTCCCGGAGGG
LOC_Os10g35500
Os.48028.1.S1_x_at--864--1591Chr10:18666846..18666870 (25 bp)
AGCTCCCGGAGCAGGTCAACCGGCT
LOC_Os10g35500
Os.48028.1.S1_x_at--37--3971Chr10:18666897..18666921 (25 bp)
CGGTTGCCGCCGATTGAGATCCTCT
LOC_Os10g35500
Os.48028.1.S1_x_at--655--10771Chr10:18666910..18666934 (25 bp)
TTGAGATCCTCTCTCTACCTTCGAA
LOC_Os10g35500
Os.48028.1.S1_x_at--551--9531Chr10:18666923..18666947 (25 bp)
TCTACCTTCGAAGTGATCACGCGTT
LOC_Os10g35500
Os.48028.1.S1_x_at--273--6451Chr10:18666937..18666961 (25 bp)
GATCACGCGTTTATCACTGACATGT
LOC_Os10g35500
Os.48028.1.S1_x_at--527--3511Chr10:18666957..18666981 (25 bp)
CATGTGAATCTAGAGTTTACTGGAC
LOC_Os10g35500
Os.48028.1.S1_x_at--373--7631Chr10:18667047..18667071 (25 bp)
GGGACGTCTAGAAGCAAAGTGTAAT
LOC_Os10g35500
Target Sequence 
CGGTACATAGGAGGCCAAGCCGGAAGGACGCGAGGTTCGAGGTGCCGGNGCTGATGGTGATTGGGGAGAAGGACTACGCG
TTCAAGTTCCCGGGGTTCGNNGCCGNCGTGCGGGGCGGCGCCATGGAGAGGTTCGCGCCGGAGCTGAAGATCGAGTTCCT
CCCGGAGGGGAGCCACTTCGCGCAGGAGCAGCTCCCGGAGCAGGTCAACCGGCTCCTCCTCGGCTTCTTCACCGAGCACC
CGGTTGCCGCCGATTGAGATCCTCTCTCTACCTTCGAAGTGATCACGCGTTTATCACTGACATGTGAATCTAGAGTTTAC
TGGACTNACTNANATGTTAGTAATAAAGTCACGTAACTTACAAGATAGACTATCTTAACGTAATAAAATAGGGACGTCTA
GAAGCAAAGTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48028.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis