Browse Element(s) Details


Os.15633.1.S2_at

Description gb:AK071225.1
DB_XREF= gi:32981248
TID=Os.15633.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phytochelatin synthetase (OSJNBa0017E08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087K13, full insert sequence.
FL= gb:AK102632.1 gb:AK071225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3546011/11COBRA-like protein 2 precursor, putative, expressed
LOC_Os04g414301/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15633.1.S2_at--708--8731Chr10:18648702..18648726 (25 bp)
TGTCACTAACTTGAACTACCGCATG
LOC_Os10g35460
Os.15633.1.S2_at--97--2631Chr10:18648742..18648766 (25 bp)
AACCTGGTTGTTCAGTATCATCCCA
LOC_Os10g35460
Os.15633.1.S2_at--734--3131Chr10:18648796..18648820 (25 bp)
AATTACAAGTCAATCCAAGTCGGCA
LOC_Os10g35460
Os.15633.1.S2_at--90--2371Chr10:18649034..18649058 (25 bp)
AAAGCCCTACTATGATTTGCTCATG
LOC_Os10g35460
Os.15633.1.S2_at--941--1612Chr10:18649061..18649085 (25 bp)
AGCTGGTCCGCTTGGAAATGTGCAA
LOC_Os10g35460
Os.15633.1.S2_at--645--7571Chr10:18649114..18649138 (25 bp)
GGGCTTCTTCCACTACTAACAATAA
LOC_Os10g35460
Os.15633.1.S2_at--419--10631Chr10:18649152..18649176 (25 bp)
TTCCCAGTCCGTGTGTACTTCAACG
LOC_Os10g35460
Os.15633.1.S2_at--1072--7751Chr10:18649176..18649200 (25 bp)
GGTGATAACTGTGTGATGCCGCCTC
LOC_Os10g35460
Os.15633.1.S2_at--247--4951Chr10:18649206..18649230 (25 bp)
GCATATCCAGTTAGTATTACGGCTT
LOC_Os10g35460
Os.15633.1.S2_at--225--9351Chr10:18649222..18649246 (25 bp)
TTACGGCTTAGAGGCGATCGTCAAG
LOC_Os10g35460
Os.15633.1.S2_at--522--2871Chr10:18649287..18649311 (25 bp)
AAGTGTATTGTCTTGCCTATTGAAG
LOC_Os10g35460
Target Sequence 
TGTCACTAACTTGAACTACCGCATGAATTTCACCGAATGGAACCTGGTTGTTCAGTATCATCCCATCCTCGATATCACCC
AGATATCTGGCTTCAATTACAAGTCAATCCAAGTCGGCAAAATAAATGATACTACGATGCTATGGGGAGTAAAGCCCTAC
TATGATTTGCTCATGCAAGCTGGTCCGCTTGGAAATGTGCAAGGAGAACTGATTGTGAGAAAGGATTTCAGGGCTTCTTC
CACTACTAACAATAACAAGGGAAGGGCCTTCCCAGTCCGTGTGTACTTCAACGGTGATAACTGTGTGATGCCGCCTCCGG
ATGCATATCCAGTTAGTATTACGGCTTAGAGGCGATCGTCAAGATGATTGTATCGCATTACTATATTTATGGGGTCATGA
ATAAAGTGTATTGTCTTGCCTATTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15633.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis