Browse Element(s) Details


Os.46550.1.A1_at

Description gb:AK064770.1
DB_XREF= gi:32974788
TID=Os.46550.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A16, full insert sequence.
FL= gb:AK064770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3543611/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g353903/111-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified
LOC_Os10g35424Os.11724.2.S1_s_at1/1110+18603063..18603852hypothetical protein
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46550.1.A1_at--375--4812Chr10:18612415..18612520 (25 bp)
GCTCTCAGGCCTCATAGCCATTAAT
LOC_Os10g35436
Os.46550.1.A1_at--315--4691Chr10:18612528..18612552 (25 bp)
GCTGGAACATTTACATTTGGAACGT
LOC_Os10g35436
Os.46550.1.A1_at--898--5452Chr10:18612547..18612571 (25 bp)
GAACGTTGTTGGCAATTGCTTGACA
LOC_Os10g35436
Os.46550.1.A1_at--319--2451Chr10:18612596..18612621 (25 bp)
AAAATCATTGAACCTGCAGTGACAA
LOC_Os10g35436
Os.46550.1.A1_at--985--1112Chr10:18612614..18612638 (25 bp)
AGTGACAAAATTGCCATCTCTAATT
LOC_Os10g35436
Os.46550.1.A1_at--227--91Chr10:18612672..18612696 (25 bp)
ATTGCCAGCGCATCATTCTTGTTAA
LOC_Os10g35436
Os.46550.1.A1_at--362--6772Chr10:18612716..18612740 (25 bp)
GTTATAACAGTTAGCTCCACACCAA
LOC_Os10g35436
Os.46550.1.A1_at--106--10451Chr10:18612726..18612750 (25 bp)
TTAGCTCCACACCAACCTTGAAGGT
LOC_Os10g35436
Os.46550.1.A1_at--678--2111Chr10:18612783..18612807 (25 bp)
ACAGGCAGTTGTTAAGACTTTCTAA
LOC_Os10g35436
Os.46550.1.A1_at--553--3711Chr10:18612828..18612852 (25 bp)
CTAGCTATTGTGCATTTGTGTTTCA
LOC_Os10g35436
Os.46550.1.A1_at--944--5931Chr10:18612861..18612885 (25 bp)
GAGCAGCAATGGATATTTCTTACTA
LOC_Os10g35436
Target Sequence 
GCTCTCAGGCCTCATAGCCATTAATGTAGTTTGCTGGAACATTTACATTTGGAACGTTGTTGGCAATTGCTTGACAAAAT
GTGGAATTGTGGAGGGGAGAAAAATCATTGAACCTGCAGTGACAAAATTGCCATCTCTAATTTTAAAACTGAAGGTGTGG
AAATCAAACATAATCATTGCCAGCGCATCATTCTTGTTAACCACCATGATATATTGTTGGTTATAACAGTTAGCTCCACA
CCAACCTTGAAGGTGTCAATAGAATGTTTAGTATAAATTGAGGAGAACAGGCAGTTGTTAAGACTTTCTAAAGAACTTGT
AGCAGCTAATACTAGCTATTGTGCATTTGTGTTTCATGGAATTTGAGCAGCAATGGATATTTCTTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46550.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis