Browse Element(s) Details


Os.46550.2.S1_x_at

Description gb:NM_197174.1
DB_XREF= gi:37535707
TID=Os.46550.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46550 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.19), mRNA.
PROD=putative membrane-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g354369/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g353903/111-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g353802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified
LOC_Os10g35424Os.11724.2.S1_s_at1/1110+18603063..18603852hypothetical protein
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46550.2.S1_x_at--464--3152Chr10:18611359..18611383 (25 bp)
AATTCTTCTGTTGTTTCCAGCTCTA
LOC_Os10g35436
Os.46550.2.S1_x_at--630--9212Chr10:18611374..18611398 (25 bp)
TCCAGCTCTACATATCCGAAATCGT
LOC_Os10g35436
Os.46550.2.S1_x_at--405--6111Chr10:18612269..18612293 (25 bp)
GAGTGCCATCCGCATCAGGGTGTAT
LOC_Os10g35436
Os.46550.2.S1_x_at--366--4131NONE
CGCAGGCGCTCTCAGATCGGTTATG
NONE
Os.46550.2.S1_x_at--345--9651Chr10:18613269..18613292 (24 bp)
TCAGATCGGTTATGCGGGAGCGCAA
LOC_Os10g35436
Os.46550.2.S1_x_at--874--3272Chr10:18613290..18613314 (25 bp)
CAACAAAAGTATGGCGTGGCGGCGC
LOC_Os10g35436
Os.46550.2.S1_x_at--404--9811NONE
TAACGCGGAACCGAGCTCAGCACTA
NONE
Os.46550.2.S1_x_at--458--7612Chr10:18613877..18613901 (25 bp)
GGGCAACTCTGACAATTTCCATGTT
LOC_Os10g35436
Os.46550.2.S1_x_at--136--8052Chr10:18613926..18613950 (25 bp)
GGAGAACCTGCCACCGAATAGTAGC
LOC_Os10g35436
Os.46550.2.S1_x_at--606--6971Chr10:18613946..18613970 (25 bp)
GTAGCCCTGCTATCTATGTTGCGAA
LOC_Os10g35436
Os.46550.2.S1_x_at--607--8572Chr10:18613985..18614009 (25 bp)
TGGATATCTATACCCTTCTAACTCT
LOC_Os10g35436
Target Sequence 
AATTCTTCTGTTGTTTCCAGCTCTACATATCCGAAATCGTCTAAAGTCTCTCAACAGAGTTACTCTGTGGTGATGGCGGG
GGGCGACCGTGGCCGAGGCGTGGAGTGCCATCCGCATCAGGGTGTATCGGCCGCGCTGCTCCGCCCTGGTCCGCAGGCTT
TGGCGGCGAGCTGGCGGCGGAGGGAGACTGTGGTGAGATCGGATTTCGCCGCTGGTGGTGTCGCTACCATGGGGGATTCG
CCGCAGGCGCTCTCAGATCGGTTATGCGGGAGCGCAACAAAAGTATGGCGTGGCGGCGCGGAGTGGACGGCCGAGGCGTT
CGCGCGGAATGGGGCTGCGGGACCGAGCCAGTCTCGCTTGCCGGTAACGCGGAACCGAGCTCAGCACTACATTGCAAAGA
TTTGGGCAACTCTGACAATTTCCATGTTCTACAAGCTTGACGTCGAGGGAATGGAGAACCTGCCACCGAATAGTAGCCCT
GCTATCTATGTTGCGAACCATCAGAGTTTTTTGGATATCTATACCCTTCTAACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46550.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis