Browse Element(s) Details


Os.47809.1.S1_a_at

Description gb:AB112808.1
DB_XREF= gi:46091158
GEN=Rf-1A
TID=Os.47809.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47809 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) Rf-1A mRNA for PPR protein, complete cds, cultivar: MTC-10R.
PROD=PPR protein
FL= gb:AB112808.1 gb:AB110016.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3543611/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified
LOC_Os10g35424Os.11724.2.S1_s_at1/1110+18603063..18603852hypothetical protein
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47809.1.S1_a_at--1000--9991Chr10:18624006..18624030 (25 bp)
TAGCGAGGTATGTATGCCACCTCTC
LOC_Os10g35436
Os.47809.1.S1_a_at--27--1031Chr10:18624011..18624035 (25 bp)
AGGTATGTATGCCACCTCTCCGAAT
LOC_Os10g35436
Os.47809.1.S1_a_at--837--10111Chr10:18624014..18624038 (25 bp)
TATGTATGCCACCTCTCCGAATTAT
LOC_Os10g35436
Os.47809.1.S1_a_at--1158--10131Chr10:18624018..18624042 (25 bp)
TATGCCACCTCTCCGAATTATTTTT
LOC_Os10g35436
Os.47809.1.S1_a_at--1051--4391Chr10:18624021..18624045 (25 bp)
GCCACCTCTCCGAATTATTTTTACT
LOC_Os10g35436
Os.47809.1.S1_a_at--533--1731Chr10:18624024..18624048 (25 bp)
ACCTCTCCGAATTATTTTTACTGTG
LOC_Os10g35436
Os.47809.1.S1_a_at--1062--5211Chr10:18624032..18624056 (25 bp)
GAATTATTTTTACTGTGGTTCCTAG
LOC_Os10g35436
Os.47809.1.S1_a_at--816--171Chr10:18624037..18624061 (25 bp)
ATTTTTACTGTGGTTCCTAGACTGT
LOC_Os10g35436
Os.47809.1.S1_a_at--796--9911Chr10:18624042..18624066 (25 bp)
TACTGTGGTTCCTAGACTGTAAACA
LOC_Os10g35436
Os.47809.1.S1_a_at--962--7891Chr10:18624048..18624072 (25 bp)
GGTTCCTAGACTGTAAACAAGCAAT
LOC_Os10g35436
Os.47809.1.S1_a_at--275--3191Chr10:18624069..18624093 (25 bp)
CAATTATGTTATGCTGTTGATGCCA
LOC_Os10g35436
Target Sequence 
TAGCGAGGTATGTATGCCACCTCTCCGAATTATTTTTACTGTGGTTCCTAGACTGTAAACAAGCAATTATGTTATGCTGT
TGATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47809.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis